Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   PXH68_RS00485 Genome accession   NZ_CP118733
Coordinates   75448..75912 (+) Length   154 a.a.
NCBI ID   WP_248028205.1    Uniprot ID   A0AA96VEM5
Organism   Streptococcus suivaginalis strain 29896     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 70448..80912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS00445 (PXH68_00445) - 70599..71240 (+) 642 WP_248028203.1 adenylate kinase -
  PXH68_RS00450 (PXH68_00450) infA 71362..71580 (+) 219 WP_002936627.1 translation initiation factor IF-1 -
  PXH68_RS00455 (PXH68_00455) rpmJ 71605..71721 (+) 117 WP_001808836.1 50S ribosomal protein L36 -
  PXH68_RS00460 (PXH68_00460) rpsM 71741..72106 (+) 366 WP_099832346.1 30S ribosomal protein S13 -
  PXH68_RS00465 (PXH68_00465) rpsK 72124..72507 (+) 384 WP_003080097.1 30S ribosomal protein S11 -
  PXH68_RS00470 (PXH68_00470) - 72552..73490 (+) 939 WP_172043752.1 DNA-directed RNA polymerase subunit alpha -
  PXH68_RS00475 (PXH68_00475) rplQ 73505..73891 (+) 387 WP_000331493.1 50S ribosomal protein L17 -
  PXH68_RS00480 (PXH68_00480) - 74075..75343 (+) 1269 WP_248028204.1 glutamate-cysteine ligase family protein -
  PXH68_RS00485 (PXH68_00485) comX/sigX 75448..75912 (+) 465 WP_248028205.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 18828.44 Da        Isoelectric Point: 9.7446

>NTDB_id=794603 PXH68_RS00485 WP_248028205.1 75448..75912(+) (comX/sigX) [Streptococcus suivaginalis strain 29896]
MFSSEYRKVKGIVDKTRREYYLKGWEHSDWHQEGMLVFYQLIQEYPGLKDSQNLYGFFKVRFRNYIKDKLRQQASQKRTF
DRMQHEEIGDLSHCLRSPGLLQDDLLTLRDGLRSYYDQLSPTQQDNYMKLIRGERFKGRQEMVRELREVLKDFR

Nucleotide


Download         Length: 465 bp        

>NTDB_id=794603 PXH68_RS00485 WP_248028205.1 75448..75912(+) (comX/sigX) [Streptococcus suivaginalis strain 29896]
ATGTTTTCATCAGAGTACAGAAAAGTTAAGGGAATAGTTGATAAAACCCGCAGAGAGTATTATTTAAAAGGGTGGGAACA
CAGCGATTGGCACCAAGAGGGGATGCTGGTCTTCTATCAACTCATACAGGAGTACCCAGGGCTTAAGGATAGTCAGAACC
TATACGGCTTCTTCAAAGTCCGGTTTCGGAACTACATTAAGGATAAACTTCGCCAACAAGCCAGCCAAAAACGGACCTTT
GATCGCATGCAACATGAAGAGATAGGAGATCTGAGCCATTGCTTACGCAGTCCAGGGCTCTTACAAGATGACTTATTGAC
ACTACGAGATGGATTACGGAGCTATTATGACCAGCTATCCCCAACCCAACAAGATAACTATATGAAACTAATCCGAGGCG
AACGGTTCAAAGGCCGACAAGAGATGGTGAGAGAACTCAGAGAAGTCTTGAAAGATTTTAGGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

54.545

100

0.545
  comX/sigX Streptococcus suis isolate S10

54.545

100

0.545
  comX/sigX Streptococcus suis P1/7

54.545

100

0.545
  comX/sigX Streptococcus mutans UA159

48.701

100

0.487
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

44.156

100

0.442
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

43.791

99.351

0.435
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

43.791

99.351

0.435
  comX/comX2 Streptococcus pneumoniae TIGR4

43.506

100

0.435
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

43.506

100

0.435
  comX/comX1 Streptococcus pneumoniae TIGR4

43.506

100

0.435
  comX/comX2 Streptococcus pneumoniae Rx1

43.506

100

0.435
  comX/comX1 Streptococcus pneumoniae Rx1

43.506

100

0.435
  comX/comX2 Streptococcus pneumoniae D39

43.506

100

0.435
  comX/comX1 Streptococcus pneumoniae D39

43.506

100

0.435
  comX/comX2 Streptococcus pneumoniae R6

43.506

100

0.435
  comX/comX1 Streptococcus pneumoniae R6

43.506

100

0.435
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

42.857

100

0.429
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

42.208

100

0.422
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40.397

98.052

0.396
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40.397

98.052

0.396
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40.397

98.052

0.396
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

40.397

98.052

0.396
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

40.397

98.052

0.396
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40.397

98.052

0.396
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

38.065

100

0.383
  comX Streptococcus thermophilus LMG 18311

37.662

100

0.377
  comX Streptococcus thermophilus LMD-9

37.662

100

0.377
  comX/sigX Streptococcus salivarius strain HSISS4

37.013

100

0.37
  comX Streptococcus salivarius SK126

37.013

100

0.37
  comX Streptococcus sobrinus strain NIDR 6715-7

36.601

99.351

0.364