Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   PUW52_RS00075 Genome accession   NZ_CP118078
Coordinates   14879..15352 (+) Length   157 a.a.
NCBI ID   WP_024053280.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI16     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 15410..16042 14879..15352 flank 58


Gene organization within MGE regions


Location: 14879..16042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW52_RS00075 (PUW52_00075) comR/comR2 14879..15352 (+) 474 WP_024053280.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19266.00 Da        Isoelectric Point: 6.2655

>NTDB_id=789809 PUW52_RS00075 WP_024053280.1 14879..15352(+) (comR/comR2) [Streptococcus anginosus strain VSI16]
MEFKELYAKVRGIVLKCRREYYVHLWELSDWEQEGMLVLYQLVSQYPQLVEEESQLYVYYKTKFRNHILDILRKQESQKR
KLNRQAYEEVSEIGHQLSLKELYLDELVILRDQLNSYQAQLSPEKQEQYERLLADERFKGRQAMIRELRAYLKDYSD

Nucleotide


Download         Length: 474 bp        

>NTDB_id=789809 PUW52_RS00075 WP_024053280.1 14879..15352(+) (comR/comR2) [Streptococcus anginosus strain VSI16]
ATGGAGTTCAAGGAGTTATATGCCAAGGTGAGAGGAATTGTGCTGAAGTGTCGGAGAGAATATTATGTCCACCTGTGGGA
ATTAAGCGATTGGGAACAAGAGGGCATGTTGGTGCTCTATCAGTTGGTAAGCCAGTATCCGCAGCTGGTAGAAGAAGAAA
GTCAGCTCTATGTTTACTATAAGACCAAGTTCCGCAATCATATCCTGGACATCCTTCGTAAACAGGAAAGTCAAAAACGC
AAACTTAATCGTCAAGCTTATGAAGAAGTGAGCGAGATTGGTCACCAGCTCAGCCTAAAAGAACTATATCTGGATGAATT
GGTGATTCTCCGAGACCAACTAAATAGCTATCAAGCTCAACTGAGCCCAGAGAAACAGGAGCAGTATGAGCGCTTACTAG
CCGATGAACGGTTCAAAGGCCGCCAAGCCATGATTCGAGAATTAAGAGCCTACTTAAAAGATTATAGCGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

59.615

99.363

0.592
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

59.615

99.363

0.592
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

53.247

98.089

0.522
  comX/comX2 Streptococcus pneumoniae TIGR4

53.247

98.089

0.522
  comX/comX1 Streptococcus pneumoniae TIGR4

53.247

98.089

0.522
  comX/comX1 Streptococcus pneumoniae R6

52.597

98.089

0.516
  comX/comX2 Streptococcus pneumoniae D39

52.597

98.089

0.516
  comX/comX2 Streptococcus pneumoniae Rx1

52.597

98.089

0.516
  comX/comX1 Streptococcus pneumoniae Rx1

52.597

98.089

0.516
  comX/comX1 Streptococcus pneumoniae D39

52.597

98.089

0.516
  comX/comX2 Streptococcus pneumoniae R6

52.597

98.089

0.516
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

52.597

98.089

0.516
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

51.948

98.089

0.51
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

51.948

98.089

0.51
  comX/sigX Streptococcus mutans UA159

49.359

99.363

0.49
  comX/sigX Streptococcus suis D9

48.387

98.726

0.478
  comX/sigX Streptococcus suis isolate S10

48.387

98.726

0.478
  comX/sigX Streptococcus suis P1/7

48.387

98.726

0.478
  comX Streptococcus salivarius SK126

46.104

98.089

0.452
  comX/sigX Streptococcus salivarius strain HSISS4

45.455

98.089

0.446
  comX Streptococcus thermophilus LMG 18311

45.455

98.089

0.446
  comX Streptococcus thermophilus LMD-9

45.455

98.089

0.446
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

39.103

99.363

0.389
  comX Streptococcus sobrinus strain NIDR 6715-7

37.013

98.089

0.363