Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | PSH63_RS31425 | Genome accession | NZ_CP117424 |
| Coordinates | 6771883..6772917 (-) | Length | 344 a.a. |
| NCBI ID | WP_024077905.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. FP833 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6766883..6777917
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH63_RS31395 (PSH63_31390) | ruvX | 6767038..6767475 (+) | 438 | WP_003195067.1 | Holliday junction resolvase RuvX | - |
| PSH63_RS31400 (PSH63_31395) | pyrR | 6767559..6768065 (+) | 507 | WP_024077900.1 | bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR | - |
| PSH63_RS31405 (PSH63_31400) | - | 6768090..6769094 (+) | 1005 | WP_024077901.1 | aspartate carbamoyltransferase catalytic subunit | - |
| PSH63_RS31410 (PSH63_31405) | - | 6769091..6770362 (+) | 1272 | WP_024077902.1 | dihydroorotase | - |
| PSH63_RS31415 (PSH63_31410) | - | 6770429..6770857 (-) | 429 | WP_024077903.1 | TM2 domain-containing protein | - |
| PSH63_RS31420 (PSH63_31415) | - | 6771108..6771743 (+) | 636 | WP_305452616.1 | C40 family peptidase | - |
| PSH63_RS31425 (PSH63_31420) | pilT | 6771883..6772917 (-) | 1035 | WP_024077905.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| PSH63_RS31430 (PSH63_31425) | - | 6772975..6773661 (+) | 687 | WP_024077906.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| PSH63_RS31435 (PSH63_31430) | proC | 6773695..6774513 (+) | 819 | WP_024077907.1 | pyrroline-5-carboxylate reductase | - |
| PSH63_RS31440 (PSH63_31435) | - | 6774538..6775126 (+) | 589 | Protein_6217 | YggT family protein | - |
| PSH63_RS31445 (PSH63_31440) | - | 6775252..6776391 (+) | 1140 | WP_024077909.1 | homoserine O-acetyltransferase | - |
| PSH63_RS31450 (PSH63_31445) | metW | 6776399..6777019 (+) | 621 | WP_024077910.1 | methionine biosynthesis protein MetW | - |
| PSH63_RS31455 (PSH63_31450) | - | 6777041..6777475 (+) | 435 | WP_024077911.1 | DUF4426 domain-containing protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 37482.31 Da Isoelectric Point: 6.6687
>NTDB_id=784768 PSH63_RS31425 WP_024077905.1 6771883..6772917(-) (pilT) [Pseudomonas sp. FP833]
MDITELLAHSVRQGASDLHLSAGLAPMLRVDGEVWPLDWPVLAPAQVANLLSPLLNQYQQKDFETSLETDFAFELPGVAR
FRVNVFQQARGMGAVFRTLAAEVQSLEALGLGEVFQRIAQLPRGLVLVTGPTGSGKSTTLAAMIDYLNQHRRQHILTLED
PVEFIHTPKMALINQRQVHRDTHSFSTALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTVDRL
VDVFPAGEKAMVRTMLSESLQAVVSQVLVKKLGGGRVAAHEIMLGTPAIRNLIREDKVAQMVSAIQTGAALGMKTLDMSL
KALVTEGVISREEAREKARVPGDI
MDITELLAHSVRQGASDLHLSAGLAPMLRVDGEVWPLDWPVLAPAQVANLLSPLLNQYQQKDFETSLETDFAFELPGVAR
FRVNVFQQARGMGAVFRTLAAEVQSLEALGLGEVFQRIAQLPRGLVLVTGPTGSGKSTTLAAMIDYLNQHRRQHILTLED
PVEFIHTPKMALINQRQVHRDTHSFSTALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTVDRL
VDVFPAGEKAMVRTMLSESLQAVVSQVLVKKLGGGRVAAHEIMLGTPAIRNLIREDKVAQMVSAIQTGAALGMKTLDMSL
KALVTEGVISREEAREKARVPGDI
Nucleotide
Download Length: 1035 bp
>NTDB_id=784768 PSH63_RS31425 WP_024077905.1 6771883..6772917(-) (pilT) [Pseudomonas sp. FP833]
ATGGATATCACTGAATTACTGGCGCACAGCGTACGCCAGGGCGCCTCCGACCTGCATCTGTCGGCTGGCCTGGCGCCGAT
GCTGCGGGTGGACGGTGAGGTATGGCCGTTGGATTGGCCGGTACTGGCACCTGCCCAAGTGGCTAACTTATTGAGCCCTT
TGCTCAACCAATACCAACAAAAGGATTTCGAAACATCTCTTGAAACGGATTTTGCCTTCGAACTGCCCGGTGTGGCGCGG
TTCCGGGTCAATGTATTTCAGCAGGCGCGCGGTATGGGGGCGGTGTTTCGCACGCTTGCAGCCGAGGTCCAGAGCTTGGA
AGCCCTTGGCCTGGGGGAGGTGTTCCAGCGTATTGCCCAGTTGCCGCGCGGCCTGGTACTGGTGACCGGACCCACCGGCT
CCGGCAAGTCCACCACCCTGGCGGCGATGATCGACTACCTCAATCAGCATCGGCGCCAGCACATCCTCACCCTCGAAGAC
CCTGTCGAGTTTATCCATACGCCGAAAATGGCCCTGATCAACCAGCGTCAGGTCCACCGCGACACCCACAGTTTTTCCAC
CGCCCTGCGTTCGGCCCTGCGGGAAGACCCGGATGTGATCCTTGTGGGCGAATTGCGCGACCTGGAAACCATTCGCCTGG
CGCTGACGGCCGCTGAGACCGGCCACCTGGTCTTTGGCACCCTGCACACCACCTCGGCGGCAAAGACCGTGGACAGGCTG
GTGGACGTGTTCCCGGCGGGGGAAAAGGCCATGGTCCGCACCATGCTGTCTGAGTCGCTGCAAGCGGTGGTGTCACAGGT
GTTGGTCAAGAAGCTCGGCGGTGGGCGGGTGGCCGCCCATGAAATCATGTTGGGCACGCCAGCCATCCGTAACTTGATCC
GCGAAGACAAGGTGGCGCAGATGGTCTCGGCGATTCAGACCGGTGCAGCGTTGGGGATGAAAACCTTGGATATGAGTTTG
AAGGCGTTGGTCACGGAAGGCGTGATCAGTCGGGAAGAGGCGCGGGAGAAGGCGAGGGTACCTGGGGATATCTGA
ATGGATATCACTGAATTACTGGCGCACAGCGTACGCCAGGGCGCCTCCGACCTGCATCTGTCGGCTGGCCTGGCGCCGAT
GCTGCGGGTGGACGGTGAGGTATGGCCGTTGGATTGGCCGGTACTGGCACCTGCCCAAGTGGCTAACTTATTGAGCCCTT
TGCTCAACCAATACCAACAAAAGGATTTCGAAACATCTCTTGAAACGGATTTTGCCTTCGAACTGCCCGGTGTGGCGCGG
TTCCGGGTCAATGTATTTCAGCAGGCGCGCGGTATGGGGGCGGTGTTTCGCACGCTTGCAGCCGAGGTCCAGAGCTTGGA
AGCCCTTGGCCTGGGGGAGGTGTTCCAGCGTATTGCCCAGTTGCCGCGCGGCCTGGTACTGGTGACCGGACCCACCGGCT
CCGGCAAGTCCACCACCCTGGCGGCGATGATCGACTACCTCAATCAGCATCGGCGCCAGCACATCCTCACCCTCGAAGAC
CCTGTCGAGTTTATCCATACGCCGAAAATGGCCCTGATCAACCAGCGTCAGGTCCACCGCGACACCCACAGTTTTTCCAC
CGCCCTGCGTTCGGCCCTGCGGGAAGACCCGGATGTGATCCTTGTGGGCGAATTGCGCGACCTGGAAACCATTCGCCTGG
CGCTGACGGCCGCTGAGACCGGCCACCTGGTCTTTGGCACCCTGCACACCACCTCGGCGGCAAAGACCGTGGACAGGCTG
GTGGACGTGTTCCCGGCGGGGGAAAAGGCCATGGTCCGCACCATGCTGTCTGAGTCGCTGCAAGCGGTGGTGTCACAGGT
GTTGGTCAAGAAGCTCGGCGGTGGGCGGGTGGCCGCCCATGAAATCATGTTGGGCACGCCAGCCATCCGTAACTTGATCC
GCGAAGACAAGGTGGCGCAGATGGTCTCGGCGATTCAGACCGGTGCAGCGTTGGGGATGAAAACCTTGGATATGAGTTTG
AAGGCGTTGGTCACGGAAGGCGTGATCAGTCGGGAAGAGGCGCGGGAGAAGGCGAGGGTACCTGGGGATATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.