Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   PO908_RS00075 Genome accession   NZ_CP117042
Coordinates   15023..15496 (+) Length   157 a.a.
NCBI ID   WP_021001138.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CGMH_KH1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10023..20496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO908_RS00060 (PO908_00060) tilS 10870..12147 (+) 1278 WP_021001136.1 tRNA lysidine(34) synthetase TilS -
  PO908_RS00065 (PO908_00065) hpt 12153..12695 (+) 543 WP_021001137.1 hypoxanthine phosphoribosyltransferase -
  PO908_RS00070 (PO908_00070) ftsH 12716..14686 (+) 1971 WP_003026841.1 ATP-dependent zinc metalloprotease FtsH -
  PO908_RS00075 (PO908_00075) comR/comR2 15023..15496 (+) 474 WP_021001138.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19334.13 Da        Isoelectric Point: 7.3490

>NTDB_id=782209 PO908_RS00075 WP_021001138.1 15023..15496(+) (comR/comR2) [Streptococcus anginosus strain CGMH_KH1]
MEFKELYGKVRGIVLKCRRDYYVHLWELSDWEQEGMLVLYQLVSRYPQLVEEDHQLYVYYKTKFRNHILDILRKQESQKR
KLDRQAYEEVSEIGHKLNLKELYLDELVILRDQLKSYQAQLSSEKQEQYERLLADERFKGRQAMIRELRAYLKDYSD

Nucleotide


Download         Length: 474 bp        

>NTDB_id=782209 PO908_RS00075 WP_021001138.1 15023..15496(+) (comR/comR2) [Streptococcus anginosus strain CGMH_KH1]
ATGGAGTTCAAGGAGTTGTATGGCAAGGTAAGGGGGATTGTATTAAAGTGCCGTCGGGATTATTATGTTCACTTGTGGGA
ATTAAGCGATTGGGAACAAGAGGGCATGTTGGTGCTCTATCAGTTGGTGAGTCGCTATCCGCAGCTAGTAGAAGAAGATC
ATCAGCTCTATGTTTACTATAAGACCAAGTTCCGCAATCATATCCTGGACATCCTCCGTAAACAGGAAAGCCAAAAACGC
AAACTCGACCGTCAAGCTTATGAAGAAGTGAGTGAGATTGGTCACAAGCTCAATCTAAAAGAACTGTATCTGGATGAATT
GGTGATTCTCCGAGACCAGCTAAAGAGTTACCAAGCTCAACTGAGTTCAGAGAAACAAGAGCAGTATGAGCGCTTACTAG
CCGATGAACGGTTCAAAGGCCGCCAAGCTATGATTCGAGAATTAAGAGCCTACTTAAAGGACTATAGCGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599
  comX/comX2 Streptococcus pneumoniae TIGR4

53.247

98.089

0.522
  comX/comX1 Streptococcus pneumoniae TIGR4

53.247

98.089

0.522
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

53.247

98.089

0.522
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

53.247

98.089

0.522
  comX/comX2 Streptococcus pneumoniae D39

52.597

98.089

0.516
  comX/comX2 Streptococcus pneumoniae Rx1

52.597

98.089

0.516
  comX/comX1 Streptococcus pneumoniae Rx1

52.597

98.089

0.516
  comX/comX1 Streptococcus pneumoniae D39

52.597

98.089

0.516
  comX/comX2 Streptococcus pneumoniae R6

52.597

98.089

0.516
  comX/comX1 Streptococcus pneumoniae R6

52.597

98.089

0.516
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

52.288

97.452

0.51
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

51.948

98.089

0.51
  comX/sigX Streptococcus mutans UA159

48.718

99.363

0.484
  comX/sigX Streptococcus suis D9

47.742

98.726

0.471
  comX/sigX Streptococcus suis isolate S10

47.742

98.726

0.471
  comX/sigX Streptococcus suis P1/7

47.742

98.726

0.471
  comX Streptococcus salivarius SK126

46.405

97.452

0.452
  comX Streptococcus thermophilus LMG 18311

45.455

98.089

0.446
  comX Streptococcus thermophilus LMD-9

45.455

98.089

0.446
  comX/sigX Streptococcus salivarius strain HSISS4

45.752

97.452

0.446
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.949

99.363

0.427
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.949

99.363

0.427
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.949

99.363

0.427
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.949

99.363

0.427
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.949

99.363

0.427
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.949

99.363

0.427
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

37.821

99.363

0.376
  comX Streptococcus sobrinus strain NIDR 6715-7

38.562

97.452

0.376