NTDB

Overview

Name	comEA	Type	Machinery gene
Locus tag	PK654_RS04710	Genome accession	NZ_CP116383
Coordinates	976978..977208 (+)	Length	76 a.a.
NCBI ID	WP_271698796.1	Uniprot ID	-
Organism	Vibrio sp. SCSIO 43137
Function	dsDNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 971978..982208

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PK654_RS04700 (PK654_04700)	-	974480..974752 (+)	273	WP_271697934.1	HU family DNA-binding protein	-
PK654_RS04705 (PK654_04705)	ppiD	974897..976762 (+)	1866	WP_271697935.1	peptidylprolyl isomerase	-
PK654_RS04710 (PK654_04710)	comEA	976978..977208 (+)	231	WP_271698796.1	helix-hairpin-helix domain-containing protein	Machinery gene
PK654_RS04715 (PK654_04715)	rrtA	977234..977788 (-)	555	WP_271697936.1	rhombosortase	-
PK654_RS04720 (PK654_04720)	-	977792..978409 (+)	618	WP_271697937.1	tRNA-uridine aminocarboxypropyltransferase	-
PK654_RS04725 (PK654_04725)	-	978536..979342 (+)	807	WP_271697938.1	ABC transporter substrate-binding protein	-
PK654_RS04730 (PK654_04730)	-	979380..980705 (-)	1326	WP_271697939.1	anti-phage deoxyguanosine triphosphatase	-
PK654_RS04735 (PK654_04735)	-	980865..981206 (-)	342	WP_271697940.1	DUF3316 domain-containing protein	-
PK654_RS04740 (PK654_04740)	yfbR	981565..982164 (-)	600	WP_271697941.1	5'-deoxynucleotidase	-

Sequence

Protein

Download Length: 76 a.a. Molecular weight: 8203.32 Da Isoelectric Point: 6.4635

                                >NTDB_id=776853 PK654_RS04710 WP_271698796.1 976978..977208(+) (comEA) [Vibrio sp. SCSIO 43137]

MSESGKEHAGIEITVNINTADAEELATLLSGVGSKKAQKIVEYRQQHGPFKTVEELSNVSGIGPAIIEKNRSRIIL

Nucleotide

Download Length: 231 bp

                                >NTDB_id=776853 PK654_RS04710 WP_271698796.1 976978..977208(+) (comEA) [Vibrio sp. SCSIO 43137]

ATGTCCGAAAGCGGAAAGGAGCATGCTGGTATAGAGATCACCGTAAACATCAATACAGCAGATGCAGAAGAGCTTGCGAC

CCTGTTGTCCGGTGTAGGCAGTAAAAAGGCTCAGAAGATAGTCGAATATCGTCAGCAGCACGGCCCGTTTAAAACCGTAG

AAGAGTTAAGTAACGTTTCTGGTATCGGTCCGGCAATCATTGAAAAGAATCGCAGCCGGATTATTCTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(14-74)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comEA	Vibrio parahaemolyticus RIMD 2210633	65.714	92.105	0.605
comEA	Vibrio campbellii strain DS40M4	61.429	92.105	0.566
comEA	Vibrio cholerae C6706	62.687	88.158	0.553
comEA	Vibrio cholerae strain A1552	62.687	88.158	0.553
comEA	Acinetobacter baylyi ADP1	55.882	89.474	0.5
comEA/comE1	Glaesserella parasuis strain SC1401	58.065	81.579	0.474
comEA	Acinetobacter baumannii strain A118	56.452	81.579	0.461
comEA	Acinetobacter baumannii D1279779	54.839	81.579	0.447
comE1/comEA	Haemophilus influenzae Rd KW20	54.839	81.579	0.447
comEA	Bacillus subtilis subsp. subtilis str. 168	50	81.579	0.408
comE	Neisseria gonorrhoeae MS11	51.786	73.684	0.382
comE	Neisseria gonorrhoeae MS11	51.786	73.684	0.382
comE	Neisseria gonorrhoeae MS11	51.786	73.684	0.382
comE	Neisseria gonorrhoeae MS11	51.786	73.684	0.382
comEA/celA/cilE	Streptococcus pneumoniae Rx1	46.032	82.895	0.382
comEA/celA/cilE	Streptococcus pneumoniae D39	46.032	82.895	0.382
comEA/celA/cilE	Streptococcus pneumoniae R6	46.032	82.895	0.382
comEA	Streptococcus thermophilus LMD-9	38.158	100	0.382
comEA	Lactococcus lactis subsp. cremoris KW2	48.333	78.947	0.382
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	44.615	85.526	0.382
comEA/celA/cilE	Streptococcus mitis NCTC 12261	44.615	85.526	0.382

Detailed information NTG0776853