NTDB

Overview

Name	pilA2	Type	Machinery gene
Locus tag	OXA92_RS09695	Genome accession	NZ_CP113433
Coordinates	2157325..2157735 (-)	Length	136 a.a.
NCBI ID	WP_016356941.1	Uniprot ID	-
Organism	Legionella pneumophila strain PATHC034
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2152325..2162735

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OXA92_RS09680 (OXA92_09680)	letS	2152645..2155377 (+)	2733	WP_010947629.1	two-component system sensor histidine kinase LetS	Regulator
OXA92_RS09685 (OXA92_09685)	-	2155474..2156718 (+)	1245	WP_010947630.1	6-phosphofructokinase	-
OXA92_RS09690 (OXA92_09690)	pilA2	2156715..2157128 (-)	414	WP_015444381.1	pilin	Machinery gene
OXA92_RS09695 (OXA92_09695)	pilA2	2157325..2157735 (-)	411	WP_016356941.1	pilin	Machinery gene
OXA92_RS09700 (OXA92_09700)	-	2158038..2158355 (+)	318	WP_010947633.1	BolA family protein	-
OXA92_RS09705 (OXA92_09705)	-	2158430..2159851 (+)	1422	WP_010947634.1	APC family permease	-
OXA92_RS09710 (OXA92_09710)	-	2159982..2161412 (-)	1431	WP_010947635.1	cellulase family glycosylhydrolase	-
OXA92_RS09715 (OXA92_09715)	kdsB	2161658..2162410 (-)	753	WP_010947636.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
OXA92_RS09720 (OXA92_09720)	-	2162407..2162586 (-)	180	WP_010947637.1	Trm112 family protein	-

Sequence

Protein

Download Length: 136 a.a. Molecular weight: 13953.16 Da Isoelectric Point: 8.4715

                                >NTDB_id=761996 OXA92_RS09695 WP_016356941.1 2157325..2157735(-) (pilA2) [Legionella pneumophila strain PATHC034]

MRQKGFTLIELMIVVAIIGILAAIAIPAYQDYTIRARVTEGLTLADSAKLAVSETAITNNALPPTQAATGYVSPAATPNV

QSIAIGANGVITITYTASAGGGTIVMTPTLQANGDVTWTCTGGTLLAKYRPASCRP

Nucleotide

Download Length: 411 bp

                                >NTDB_id=761996 OXA92_RS09695 WP_016356941.1 2157325..2157735(-) (pilA2) [Legionella pneumophila strain PATHC034]

ATGAGACAAAAGGGTTTTACTTTAATTGAATTGATGATAGTCGTAGCGATTATCGGTATTTTGGCAGCAATCGCTATACC

AGCCTATCAAGATTACACAATACGAGCTCGTGTTACGGAAGGTCTGACCTTGGCAGATTCTGCAAAACTTGCCGTATCTG

AAACGGCTATTACCAACAACGCGTTACCACCTACTCAGGCTGCAACGGGCTACGTGTCTCCCGCAGCTACGCCCAATGTA

CAATCAATTGCTATTGGTGCCAACGGTGTGATTACCATAACATATACCGCTTCAGCAGGTGGTGGTACCATAGTTATGAC

CCCAACCTTACAAGCTAACGGTGATGTAACCTGGACTTGTACGGGTGGTACATTATTGGCCAAATACCGACCTGCCAGTT

GCAGACCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Pilin (bacterial filament) (Pilin)

(35-135)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA2	Legionella pneumophila str. Paris	97.794	100	0.978
pilA2	Legionella pneumophila strain ERS1305867	97.794	100	0.978
pilA	Ralstonia pseudosolanacearum GMI1000	48.447	100	0.574
comP	Acinetobacter baylyi ADP1	53.103	100	0.566
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	36.413	100	0.493
pilA/pilA1	Eikenella corrodens VA1	39.873	100	0.463
pilE	Neisseria gonorrhoeae strain FA1090	38.217	100	0.441
pilA	Haemophilus influenzae 86-028NP	40.816	100	0.441
pilE	Neisseria gonorrhoeae MS11	37.821	100	0.434
pilA/pilAI	Pseudomonas stutzeri DSM 10701	42.963	99.265	0.426
pilA	Pseudomonas aeruginosa PAK	39.189	100	0.426
pilA	Acinetobacter baumannii strain A118	39.041	100	0.419
pilA	Haemophilus influenzae Rd KW20	40.741	99.265	0.404
pilA/pilAII	Pseudomonas stutzeri DSM 10701	39.855	100	0.404
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	37.762	100	0.397
pilA	Vibrio cholerae strain A1552	37.762	100	0.397
pilA	Vibrio cholerae C6706	37.762	100	0.397
pilA	Glaesserella parasuis strain SC1401	38.636	97.059	0.375

Detailed information NTG0761996