Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   NW957_RS07245 Genome accession   NZ_CP102977
Coordinates   1527549..1528046 (-) Length   165 a.a.
NCBI ID   WP_001829055.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 27-G-H     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1522549..1533046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW957_RS07220 (NW957_07220) gcvPB 1522711..1524183 (-) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  NW957_RS07225 (NW957_07225) gcvPA 1524176..1525522 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW957_RS07230 (NW957_07230) gcvT 1525542..1526633 (-) 1092 WP_165468756.1 glycine cleavage system aminomethyltransferase GcvT -
  NW957_RS07235 (NW957_07235) - 1526792..1527316 (-) 525 WP_001015121.1 shikimate kinase -
  NW957_RS07240 (NW957_07240) - 1527306..1527452 (-) 147 WP_001789879.1 hypothetical protein -
  NW957_RS07245 (NW957_07245) comGF 1527549..1528046 (-) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW957_RS07250 (NW957_07250) comGE 1527964..1528263 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  NW957_RS07255 (NW957_07255) comGD 1528250..1528696 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW957_RS07260 (NW957_07260) comGC 1528674..1528985 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW957_RS07265 (NW957_07265) comGB 1528999..1530069 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW957_RS07270 (NW957_07270) comGA 1530041..1531015 (-) 975 WP_000697217.1 competence type IV pilus ATPase ComGA Machinery gene
  NW957_RS07275 (NW957_07275) - 1531067..1531690 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW957_RS07280 (NW957_07280) - 1531687..1532016 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW957_RS07285 (NW957_07285) - 1532016..1533002 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19183.92 Da        Isoelectric Point: 10.2192

>NTDB_id=721037 NW957_RS07245 WP_001829055.1 1527549..1528046(-) (comGF) [Staphylococcus aureus strain 27-G-H]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=721037 NW957_RS07245 WP_001829055.1 1527549..1528046(-) (comGF) [Staphylococcus aureus strain 27-G-H]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(68-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.182

100

0.982
  comGF Staphylococcus aureus MW2

98.182

100

0.982