Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NW945_RS04530 Genome accession   NZ_CP102974
Coordinates   945329..946315 (+) Length   328 a.a.
NCBI ID   WP_258414593.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 01-RR-86     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 940329..951315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW945_RS04505 (NW945_04505) opp4B 940542..941504 (+) 963 WP_000239818.1 oligopeptide ABC transporter permease -
  NW945_RS04510 (NW945_04510) opp4C 941516..942397 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  NW945_RS04515 (NW945_04515) trpS 942439..943428 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  NW945_RS04520 (NW945_04520) spxA 943723..944118 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  NW945_RS04525 (NW945_04525) mecA 944489..945208 (+) 720 WP_001217728.1 adaptor protein MecA -
  NW945_RS04530 (NW945_04530) coiA 945329..946315 (+) 987 WP_258414593.1 competence protein CoiA family protein Machinery gene
  NW945_RS04535 (NW945_04535) pepF 946363..948171 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  NW945_RS04540 (NW945_04540) yjbH 948630..949436 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  NW945_RS04545 (NW945_04545) - 949459..949824 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  NW945_RS04550 (NW945_04550) - 949928..950521 (-) 594 WP_258414594.1 CYTH domain-containing protein -
  NW945_RS04555 (NW945_04555) - 950707..951054 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38724.40 Da        Isoelectric Point: 9.7214

>NTDB_id=720946 NW945_RS04530 WP_258414593.1 945329..946315(+) (coiA) [Staphylococcus aureus strain 01-RR-86]
MLVALNGAKERVLATTALRKIQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIKMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSMFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=720946 NW945_RS04530 WP_258414593.1 945329..946315(+) (coiA) [Staphylococcus aureus strain 01-RR-86]
ATGTTAGTAGCTTTAAATGGAGCAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGATACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTTACTCGAAAACTT
CATACGTTTAATTTAGAGAAAAAACAAATAAAGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAATGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGCTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATAGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(16-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

97.256

100

0.973
  coiA Staphylococcus aureus N315

96.646

100

0.966