Detailed information
Bioinformatically predicted
Overview
| Name | comX/sigX | Type | Regulator |
| Locus tag | NQZ92_RS00085 | Genome accession | NZ_CP102143 |
| Coordinates | 16137..16607 (+) | Length | 156 a.a. |
| NCBI ID | WP_002936602.1 | Uniprot ID | A0A075SE61 |
| Organism | Streptococcus suis strain DNR43 | ||
| Function | activate transcription of late competence genes (predicted from homology) Competence regulation |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 13841..58685 | 16137..16607 | within | 0 |
Gene organization within MGE regions
Location: 13841..58685
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NQZ92_RS00080 (NQZ92_00080) | ftsH | 13841..15811 (+) | 1971 | WP_004194314.1 | ATP-dependent zinc metalloprotease FtsH | - |
| NQZ92_RS00085 (NQZ92_00085) | comX/sigX | 16137..16607 (+) | 471 | WP_002936602.1 | sigma-70 family RNA polymerase sigma factor | Regulator |
| NQZ92_RS00190 (NQZ92_00190) | mreC | 23910..24746 (+) | 837 | WP_009908845.1 | rod shape-determining protein MreC | - |
| NQZ92_RS00195 (NQZ92_00195) | mreD | 24736..25251 (+) | 516 | WP_002935339.1 | rod shape-determining protein MreD | - |
| NQZ92_RS00200 (NQZ92_00200) | pcsB | 25336..26592 (+) | 1257 | WP_002935338.1 | peptidoglycan hydrolase PcsB | - |
| NQZ92_RS00205 (NQZ92_00205) | - | 26695..27660 (+) | 966 | WP_024409289.1 | ribose-phosphate diphosphokinase | - |
| NQZ92_RS00210 (NQZ92_00210) | - | 27751..28929 (+) | 1179 | WP_002935336.1 | pyridoxal phosphate-dependent aminotransferase | - |
| NQZ92_RS00215 (NQZ92_00215) | recO | 28916..29698 (+) | 783 | WP_002935335.1 | DNA repair protein RecO | - |
| NQZ92_RS00220 (NQZ92_00220) | plsX | 29695..30702 (+) | 1008 | WP_002935334.1 | phosphate acyltransferase PlsX | - |
| NQZ92_RS00225 (NQZ92_00225) | - | 30695..30943 (+) | 249 | WP_002935333.1 | phosphopantetheine-binding protein | - |
| NQZ92_RS00230 (NQZ92_00230) | purC | 31061..31768 (+) | 708 | WP_002935328.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| NQZ92_RS00235 (NQZ92_00235) | - | 31781..35500 (+) | 3720 | WP_009908856.1 | phosphoribosylformylglycinamidine synthase | - |
| NQZ92_RS00240 (NQZ92_00240) | purF | 35503..36957 (+) | 1455 | WP_009908857.1 | amidophosphoribosyltransferase | - |
| NQZ92_RS00245 (NQZ92_00245) | purM | 37013..38035 (+) | 1023 | WP_009908859.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
| NQZ92_RS00250 (NQZ92_00250) | purN | 38032..38583 (+) | 552 | WP_009908860.1 | phosphoribosylglycinamide formyltransferase | - |
| NQZ92_RS00255 (NQZ92_00255) | purH | 38593..40140 (+) | 1548 | WP_002935323.1 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| NQZ92_RS00260 (NQZ92_00260) | - | 40205..41035 (+) | 831 | WP_002935322.1 | DNA adenine methylase | - |
| NQZ92_RS00265 (NQZ92_00265) | - | 41025..41840 (+) | 816 | WP_032499218.1 | site-specific DNA-methyltransferase | - |
| NQZ92_RS00270 (NQZ92_00270) | - | 41818..42744 (+) | 927 | WP_002935320.1 | type II restriction endonuclease | - |
| NQZ92_RS00275 (NQZ92_00275) | - | 42744..43649 (+) | 906 | WP_002935319.1 | type II restriction endonuclease | - |
| NQZ92_RS00280 (NQZ92_00280) | purD | 43770..45032 (+) | 1263 | WP_002935318.1 | phosphoribosylamine--glycine ligase | - |
| NQZ92_RS00285 (NQZ92_00285) | purE | 45058..45546 (+) | 489 | WP_009908864.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| NQZ92_RS00290 (NQZ92_00290) | purK | 45533..46618 (+) | 1086 | WP_002935314.1 | 5-(carboxyamino)imidazole ribonucleotide synthase | - |
| NQZ92_RS00295 (NQZ92_00295) | - | 46605..47528 (+) | 924 | WP_002935313.1 | DUF4268 domain-containing protein | - |
| NQZ92_RS00300 (NQZ92_00300) | purB | 47563..48855 (+) | 1293 | WP_013730055.1 | adenylosuccinate lyase | - |
| NQZ92_RS00305 (NQZ92_00305) | - | 49367..50191 (+) | 825 | WP_002935311.1 | ABC transporter ATP-binding protein | - |
| NQZ92_RS00310 (NQZ92_00310) | - | 50184..50918 (+) | 735 | WP_002935310.1 | ABC transporter permease | - |
| NQZ92_RS00315 (NQZ92_00315) | - | 51253..51981 (+) | 729 | WP_002935309.1 | DUF2705 family protein | - |
| NQZ92_RS00320 (NQZ92_00320) | - | 51991..52569 (+) | 579 | WP_002935308.1 | CPBP family intramembrane glutamic endopeptidase | - |
| NQZ92_RS00325 (NQZ92_00325) | - | 52584..53012 (+) | 429 | WP_002935307.1 | Msa family membrane protein | - |
| NQZ92_RS00330 (NQZ92_00330) | - | 53005..53877 (+) | 873 | WP_002935305.1 | ABC transporter ATP-binding protein | - |
| NQZ92_RS00335 (NQZ92_00335) | - | 53883..54653 (+) | 771 | WP_002935304.1 | membrane protein | - |
| NQZ92_RS00340 (NQZ92_00340) | - | 54656..56368 (+) | 1713 | WP_002935303.1 | ABC transporter ATP-binding protein | - |
| NQZ92_RS00345 (NQZ92_00345) | - | 56470..56643 (+) | 174 | WP_002935301.1 | hypothetical protein | - |
| NQZ92_RS00350 (NQZ92_00350) | ruvB | 56938..57939 (+) | 1002 | WP_002935300.1 | Holliday junction branch migration DNA helicase RuvB | - |
| NQZ92_RS00355 (NQZ92_00355) | - | 57939..58685 (+) | 747 | WP_002935299.1 | GNAT family N-acetyltransferase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 19072.97 Da Isoelectric Point: 8.9339
>NTDB_id=714869 NQZ92_RS00085 WP_002936602.1 16137..16607(+) (comX/sigX) [Streptococcus suis strain DNR43]
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKR
KFDRMPHEDIHELSHAIQSPGLINDELLMLRGALRDYRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKR
KFDRMPHEDIHELSHAIQSPGLINDELLMLRGALRDYRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR
Nucleotide
Download Length: 471 bp
>NTDB_id=714869 NQZ92_RS00085 WP_002936602.1 16137..16607(+) (comX/sigX) [Streptococcus suis strain DNR43]
ATGGAATTCGAAAAAGTGTACGCAAGCGTCAAAGGTATTGTAAATAAGGCTCGAAAAGAGTTTTACATTAAACTATGGGA
TCGAGATGATTGGGAACAAGAAGGAATGATGACCTTGTTTGAATTGTTGGAAGCTCAACCGTGGCTAGTTGATGAACAAG
TTCAATTATATTGTTATTTTAAAGTCAAGTTCAGAAATCGAATCAAGGATCGTATCCGCAAACAGGAAAGTCAAAAACGC
AAGTTTGACCGTATGCCACATGAAGATATTCACGAATTATCTCACGCAATACAATCACCGGGATTAATAAACGATGAACT
ATTAATGCTAAGAGGTGCCTTGAGAGATTATCGAAAAAATCTGAGTAATGATCAACTTGATAAATACGAAAAATTAATTA
GCGGACAATGTTTTAATGGTCGCCGTGAAATGATACGTGATTTACAAATTCATTTGAAAGACTTTCGCTAA
ATGGAATTCGAAAAAGTGTACGCAAGCGTCAAAGGTATTGTAAATAAGGCTCGAAAAGAGTTTTACATTAAACTATGGGA
TCGAGATGATTGGGAACAAGAAGGAATGATGACCTTGTTTGAATTGTTGGAAGCTCAACCGTGGCTAGTTGATGAACAAG
TTCAATTATATTGTTATTTTAAAGTCAAGTTCAGAAATCGAATCAAGGATCGTATCCGCAAACAGGAAAGTCAAAAACGC
AAGTTTGACCGTATGCCACATGAAGATATTCACGAATTATCTCACGCAATACAATCACCGGGATTAATAAACGATGAACT
ATTAATGCTAAGAGGTGCCTTGAGAGATTATCGAAAAAATCTGAGTAATGATCAACTTGATAAATACGAAAAATTAATTA
GCGGACAATGTTTTAATGGTCGCCGTGAAATGATACGTGATTTACAAATTCATTTGAAAGACTTTCGCTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.