Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   NLY77_RS00580 Genome accession   NZ_CP100431
Coordinates   91631..92101 (+) Length   156 a.a.
NCBI ID   WP_254410585.1    Uniprot ID   -
Organism   Streptococcus suis strain 1521251     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 90790..91113 91631..92101 flank 518


Gene organization within MGE regions


Location: 90790..92101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY77_RS00580 (NLY77_00580) comX/sigX 91631..92101 (+) 471 WP_254410585.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 19100.99 Da        Isoelectric Point: 8.9396

>NTDB_id=705236 NLY77_RS00580 WP_254410585.1 91631..92101(+) (comX/sigX) [Streptococcus suis strain 1521251]
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDEQVQLYCYFKVKFRNRIKDRIRRQESQKR
KFDRMPHEDIHELSHAIQSPGLINDELLMLRGALRDYRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR

Nucleotide


Download         Length: 471 bp        

>NTDB_id=705236 NLY77_RS00580 WP_254410585.1 91631..92101(+) (comX/sigX) [Streptococcus suis strain 1521251]
ATGGAATTCGAAAAAGTGTACGCAAGCGTCAAAGGTATTGTAAATAAGGCTCGAAAAGAGTTTTACATTAAACTATGGGA
TCGAGATGATTGGGAACAAGAAGGAATGATGACCTTGTTTGAATTATTAGAAGCTCAACCGTGGCTAGTTGATGAACAAG
TTCAATTATATTGTTATTTTAAAGTTAAGTTCAGAAATCGAATCAAGGATCGTATCCGCAGACAGGAAAGTCAAAAACGC
AAGTTTGACCGTATGCCACATGAAGATATTCACGAATTATCTCACGCAATACAATCACCGGGATTAATAAACGATGAACT
ATTAATGCTAAGAGGTGCCTTGAGAGATTATCGAAAAAATCTGAGTAATGATCAACTTGATAAATACGAAAAATTAATTA
GCGGACAATGTTTTAATGGTCGCCGTGAAATGATACGTGATTTACAAATTCATTTGAAAGACTTTCGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

99.359

100

0.994
  comX/sigX Streptococcus suis isolate S10

98.718

100

0.987
  comX/sigX Streptococcus suis P1/7

98.718

100

0.987
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

49.677

99.359

0.494
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

49.677

99.359

0.494
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

45.098

98.077

0.442
  comX/comX2 Streptococcus pneumoniae TIGR4

45.695

96.795

0.442
  comX/comX1 Streptococcus pneumoniae TIGR4

45.695

96.795

0.442
  comX/comX2 Streptococcus pneumoniae R6

45.033

96.795

0.436
  comX/comX2 Streptococcus pneumoniae Rx1

45.033

96.795

0.436
  comX/comX1 Streptococcus pneumoniae Rx1

45.033

96.795

0.436
  comX/comX2 Streptococcus pneumoniae D39

45.033

96.795

0.436
  comX/comX1 Streptococcus pneumoniae D39

45.033

96.795

0.436
  comX/comX1 Streptococcus pneumoniae R6

45.033

96.795

0.436
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

44.444

98.077

0.436
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

44.444

98.077

0.436
  comX/sigX Streptococcus mutans UA159

43.226

99.359

0.429
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

43.791

98.077

0.429
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

41.29

99.359

0.41
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

41.29

99.359

0.41
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40.645

99.359

0.404
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40.645

99.359

0.404
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40.645

99.359

0.404
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40.645

99.359

0.404
  comX Streptococcus thermophilus LMG 18311

41.176

98.077

0.404
  comX Streptococcus thermophilus LMD-9

41.176

98.077

0.404
  comX/sigX Streptococcus salivarius strain HSISS4

40.523

98.077

0.397
  comX Streptococcus salivarius SK126

40.523

98.077

0.397
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

38.854

100

0.391
  comX Streptococcus sobrinus strain NIDR 6715-7

39.869

98.077

0.391