Detailed information
Bioinformatically predicted
Overview
| Name | comX/sigX | Type | Regulator |
| Locus tag | NKZ64_RS00080 | Genome accession | NZ_CP100338 |
| Coordinates | 16136..16606 (+) | Length | 156 a.a. |
| NCBI ID | WP_002936602.1 | Uniprot ID | A0A075SE61 |
| Organism | Streptococcus suis strain STC80 | ||
| Function | activate transcription of late competence genes (predicted from homology) Competence regulation |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 13840..42955 | 16136..16606 | within | 0 |
| IS/Tn | 16772..17725 | 16136..16606 | flank | 166 |
Gene organization within MGE regions
Location: 13840..42955
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NKZ64_RS00075 (NKZ64_00075) | ftsH | 13840..15810 (+) | 1971 | WP_004194314.1 | ATP-dependent zinc metalloprotease FtsH | - |
| NKZ64_RS00080 (NKZ64_00080) | comX/sigX | 16136..16606 (+) | 471 | WP_002936602.1 | sigma-70 family RNA polymerase sigma factor | Regulator |
| NKZ64_RS00085 (NKZ64_00085) | - | 16772..17725 (-) | 954 | WP_024376800.1 | IS30 family transposase | - |
| NKZ64_RS00190 (NKZ64_00190) | mreC | 25026..25862 (+) | 837 | WP_024417842.1 | rod shape-determining protein MreC | - |
| NKZ64_RS00195 (NKZ64_00195) | mreD | 25852..26367 (+) | 516 | WP_002935339.1 | rod shape-determining protein MreD | - |
| NKZ64_RS00200 (NKZ64_00200) | pcsB | 26452..27708 (+) | 1257 | WP_002935338.1 | peptidoglycan hydrolase PcsB | - |
| NKZ64_RS00205 (NKZ64_00205) | - | 27811..28779 (+) | 969 | WP_002935337.1 | ribose-phosphate diphosphokinase | - |
| NKZ64_RS00210 (NKZ64_00210) | - | 28866..30044 (+) | 1179 | WP_002935336.1 | pyridoxal phosphate-dependent aminotransferase | - |
| NKZ64_RS00215 (NKZ64_00215) | recO | 30031..30813 (+) | 783 | WP_002935335.1 | DNA repair protein RecO | - |
| NKZ64_RS00220 (NKZ64_00220) | plsX | 30810..31817 (+) | 1008 | WP_002935334.1 | phosphate acyltransferase PlsX | - |
| NKZ64_RS00225 (NKZ64_00225) | - | 31810..32058 (+) | 249 | WP_002935333.1 | phosphopantetheine-binding protein | - |
| NKZ64_RS00230 (NKZ64_00230) | purC | 32176..32883 (+) | 708 | WP_002935328.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| NKZ64_RS00235 (NKZ64_00235) | - | 32896..36615 (+) | 3720 | WP_002935327.1 | phosphoribosylformylglycinamidine synthase | - |
| NKZ64_RS00240 (NKZ64_00240) | purF | 36618..38072 (+) | 1455 | WP_002935326.1 | amidophosphoribosyltransferase | - |
| NKZ64_RS00245 (NKZ64_00245) | purM | 38128..39150 (+) | 1023 | WP_204101660.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
| NKZ64_RS00250 (NKZ64_00250) | purN | 39147..39698 (+) | 552 | WP_009908860.1 | phosphoribosylglycinamide formyltransferase | - |
| NKZ64_RS00255 (NKZ64_00255) | purH | 39708..41255 (+) | 1548 | WP_002935323.1 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| NKZ64_RS00260 (NKZ64_00260) | - | 41320..42150 (+) | 831 | WP_002935322.1 | DNA adenine methylase | - |
| NKZ64_RS00265 (NKZ64_00265) | - | 42140..42955 (+) | 816 | WP_032499218.1 | site-specific DNA-methyltransferase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 19072.97 Da Isoelectric Point: 8.9339
>NTDB_id=704577 NKZ64_RS00080 WP_002936602.1 16136..16606(+) (comX/sigX) [Streptococcus suis strain STC80]
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKR
KFDRMPHEDIHELSHAIQSPGLINDELLMLRGALRDYRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKR
KFDRMPHEDIHELSHAIQSPGLINDELLMLRGALRDYRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR
Nucleotide
Download Length: 471 bp
>NTDB_id=704577 NKZ64_RS00080 WP_002936602.1 16136..16606(+) (comX/sigX) [Streptococcus suis strain STC80]
ATGGAATTCGAAAAAGTGTACGCAAGCGTCAAAGGTATTGTAAATAAGGCTCGAAAAGAGTTTTACATTAAACTATGGGA
TCGAGATGATTGGGAACAAGAAGGAATGATGACCTTGTTTGAATTGTTGGAAGCTCAACCGTGGCTAGTTGATGAACAAG
TTCAATTATATTGTTATTTTAAAGTCAAGTTCAGAAATCGAATCAAGGATCGTATCCGCAAACAGGAAAGTCAAAAACGC
AAGTTTGACCGTATGCCACATGAAGATATTCACGAATTATCTCACGCAATACAATCACCGGGATTAATAAACGATGAACT
ATTAATGCTAAGAGGTGCCTTGAGAGATTATCGAAAAAATCTGAGTAATGATCAACTTGATAAATACGAAAAATTAATTA
GCGGACAATGTTTTAATGGTCGCCGTGAAATGATACGTGATTTACAAATTCATTTGAAAGACTTTCGCTAA
ATGGAATTCGAAAAAGTGTACGCAAGCGTCAAAGGTATTGTAAATAAGGCTCGAAAAGAGTTTTACATTAAACTATGGGA
TCGAGATGATTGGGAACAAGAAGGAATGATGACCTTGTTTGAATTGTTGGAAGCTCAACCGTGGCTAGTTGATGAACAAG
TTCAATTATATTGTTATTTTAAAGTCAAGTTCAGAAATCGAATCAAGGATCGTATCCGCAAACAGGAAAGTCAAAAACGC
AAGTTTGACCGTATGCCACATGAAGATATTCACGAATTATCTCACGCAATACAATCACCGGGATTAATAAACGATGAACT
ATTAATGCTAAGAGGTGCCTTGAGAGATTATCGAAAAAATCTGAGTAATGATCAACTTGATAAATACGAAAAATTAATTA
GCGGACAATGTTTTAATGGTCGCCGTGAAATGATACGTGATTTACAAATTCATTTGAAAGACTTTCGCTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.