Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NHB35_RS10710 Genome accession   NZ_CP099572
Coordinates   2056617..2057279 (+) Length   220 a.a.
NCBI ID   WP_353432346.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-UH23A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2051617..2062279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHB35_RS10690 (NHB35_10675) - 2053094..2053675 (-) 582 WP_353432342.1 DUF4390 domain-containing protein -
  NHB35_RS10695 (NHB35_10680) rsmB 2053672..2054976 (-) 1305 WP_353432343.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NHB35_RS10700 (NHB35_10685) fmt 2054988..2055998 (-) 1011 WP_353432344.1 methionyl-tRNA formyltransferase -
  NHB35_RS10705 (NHB35_10690) def 2056006..2056521 (-) 516 WP_353432345.1 peptide deformylase -
  NHB35_RS10710 (NHB35_10695) dprA 2056617..2057279 (+) 663 WP_353432346.1 DNA-processing protein DprA Machinery gene
  NHB35_RS10715 (NHB35_10700) - 2057463..2060126 (+) 2664 WP_353432347.1 DNA topoisomerase III -
  NHB35_RS10720 (NHB35_10705) mnmC 2060096..2061187 (-) 1092 Protein_2098 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23357.21 Da        Isoelectric Point: 9.5260

>NTDB_id=700740 NHB35_RS10710 WP_353432346.1 2056617..2057279(+) (dprA) [Polynucleobacter sp. MWH-UH23A]
MHTLFRKDKNYPPRLNDLFDPPNPLYISGDLGLLKMPMIAIVGSRQASARGLRNAAIFADQLAHAGALIVSGLARGIDGA
AHQATLSGPAKRFTAAVCGNGLDVVYPKEHCGLAAKIGQQGLLISELALGTGPKPFHFPRRNRIIAALALGVVVIEAAEN
SGSLITARIAADLGREVFALPGPAHDPLYAGCHQLIQQGAKLVCKPNEVLEELVFHKNRI

Nucleotide


Download         Length: 663 bp        

>NTDB_id=700740 NHB35_RS10710 WP_353432346.1 2056617..2057279(+) (dprA) [Polynucleobacter sp. MWH-UH23A]
ATGCACACACTGTTCCGAAAGGATAAAAACTATCCGCCCCGCTTAAATGATTTGTTTGACCCTCCCAATCCGCTATATAT
AAGTGGCGATTTAGGCTTATTAAAAATGCCTATGATTGCTATCGTTGGATCCCGCCAGGCCAGCGCACGCGGCCTTAGGA
ATGCCGCCATATTCGCGGATCAACTCGCTCATGCTGGCGCTTTAATCGTTTCAGGGCTAGCAAGAGGCATTGATGGCGCA
GCTCATCAAGCCACGCTAAGTGGGCCTGCCAAGCGCTTCACTGCAGCGGTGTGCGGAAACGGATTAGATGTTGTTTACCC
CAAAGAGCATTGCGGGCTGGCAGCCAAAATTGGTCAACAAGGTTTATTAATTTCTGAATTGGCCCTCGGTACGGGGCCCA
AACCCTTTCACTTTCCCAGACGAAATCGAATCATTGCGGCTTTAGCATTAGGGGTTGTTGTAATTGAGGCGGCCGAAAAT
TCAGGCTCATTGATAACAGCCAGAATTGCCGCAGACCTTGGCAGAGAGGTTTTTGCACTCCCAGGACCCGCGCACGACCC
GCTTTATGCAGGCTGCCACCAGCTAATCCAACAAGGCGCCAAGCTAGTCTGCAAGCCCAATGAGGTGCTAGAAGAGCTGG
TTTTCCATAAAAACCGCATCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(2-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

50.472

96.364

0.486
  dprA Vibrio cholerae strain A1552

52.217

92.273

0.482
  dprA Vibrio campbellii strain DS40M4

49.057

96.364

0.473
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

49.038

94.545

0.464
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

49.038

94.545

0.464
  dprA/cilB/dalA Streptococcus pneumoniae R6

49.038

94.545

0.464
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

49.038

94.545

0.464
  dprA/cilB/dalA Streptococcus pneumoniae D39

49.038

94.545

0.464
  dprA/cilB/dalA Streptococcus mitis SK321

48.558

94.545

0.459
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.495

100

0.459
  dprA Streptococcus mutans UA159

47.847

95

0.455
  dprA Glaesserella parasuis strain SC1401

44.749

99.545

0.445
  dprA Acinetobacter baumannii D1279779

46.86

94.091

0.441
  dprA Neisseria meningitidis strain C311

45.933

95

0.436
  dprA Neisseria meningitidis MC58

45.933

95

0.436
  dprA Acinetobacter baumannii strain A118

45.894

94.091

0.432
  dprA Acinetobacter baylyi ADP1

45.894

94.091

0.432
  dprA Neisseria gonorrhoeae strain FA1090

44.976

95

0.427
  dprA Neisseria gonorrhoeae MS11

44.976

95

0.427
  dprA Haemophilus influenzae Rd KW20

44.928

94.091

0.423
  dprA Thermus thermophilus HB27

45.146

93.636

0.423
  dprA Lactococcus lactis subsp. cremoris KW2

44.019

95

0.418
  dprA Bacillus subtilis subsp. subtilis str. 168

42.523

97.273

0.414
  dprA Latilactobacillus sakei subsp. sakei 23K

40.952

95.455

0.391