Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   SA27298_RS08695 Genome accession   NZ_AP018548
Coordinates   1784404..1784877 (-) Length   157 a.a.
NCBI ID   WP_003031176.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1779404..1789877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS08685 (SA27298_1769) tsf 1782263..1783306 (-) 1044 WP_003031142.1 translation elongation factor Ts -
  SA27298_RS08690 (SA27298_1770) rpsB 1783389..1784171 (-) 783 WP_003026510.1 30S ribosomal protein S2 -
  SA27298_RS08695 (SA27298_1772) comR/comR2 1784404..1784877 (-) 474 WP_003031176.1 sigma-70 family RNA polymerase sigma factor Regulator
  SA27298_RS08700 (SA27298_1773) rplQ 1785304..1785690 (-) 387 WP_003026513.1 50S ribosomal protein L17 -
  SA27298_RS08705 (SA27298_1774) - 1785702..1786640 (-) 939 WP_003029466.1 DNA-directed RNA polymerase subunit alpha -
  SA27298_RS08710 (SA27298_1775) rpsK 1786685..1787068 (-) 384 WP_001118385.1 30S ribosomal protein S11 -
  SA27298_RS08715 (SA27298_1776) rpsM 1787088..1787453 (-) 366 WP_002262317.1 30S ribosomal protein S13 -
  SA27298_RS08720 rpmJ 1787469..1787585 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  SA27298_RS08725 (SA27298_1777) infA 1787610..1787828 (-) 219 WP_001029883.1 translation initiation factor IF-1 -
  SA27298_RS08730 (SA27298_1778) - 1787944..1788582 (-) 639 WP_003031144.1 adenylate kinase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19267.07 Da        Isoelectric Point: 6.7309

>NTDB_id=70009 SA27298_RS08695 WP_003031176.1 1784404..1784877(-) (comR/comR2) [Streptococcus anginosus strain CCUG 27928]
MEFKELYGKVRGIVLKCRREYYVHLWELSDWEQEGMLVLYQLVSQYPQLVEEESQLYVYYKTKFRNHILDILRKQESQKR
KLDRQAYEEVSEIGHKLSLKELYLDELVILRDQLKSYQAQLSPEKQEQYERLLADERFKGRQAMIRELRAYLKDYSD

Nucleotide


Download         Length: 474 bp        

>NTDB_id=70009 SA27298_RS08695 WP_003031176.1 1784404..1784877(-) (comR/comR2) [Streptococcus anginosus strain CCUG 27928]
ATGGAGTTCAAGGAGTTATATGGCAAGGTAAGAGGAATTGTGCTGAAGTGTCGGAGGGAATATTATGTCCACCTGTGGGA
ATTAAGCGATTGGGAACAAGAGGGGATGTTGGTGCTCTATCAGTTGGTAAGCCAGTATCCGCAGCTGGTAGAAGAAGAAA
GTCAGCTCTATGTTTACTATAAGACCAAGTTCCGCAATCATATTCTGGACATCCTCCGTAAACAGGAAAGTCAAAAACGC
AAACTCGATCGTCAAGCTTATGAAGAAGTGAGCGAGATTGGTCACAAGCTCAGCCTAAAAGAACTATATCTGGATGAATT
GGTGATTCTCCGAGACCAGCTAAAGAGCTATCAAGCTCAACTGAGCCCAGAGAAACAGGAGCAGTACGAGCGCTTACTAG
CCGATGAACGGTTCAAAGGCCGCCAAGCCATGATTCGAGAATTAAGAGCCTACTTAAAAGATTATAGTGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae TIGR4

53.896

98.089

0.529
  comX/comX1 Streptococcus pneumoniae TIGR4

53.896

98.089

0.529
  comX/comX1 Streptococcus pneumoniae R6

53.247

98.089

0.522
  comX/comX2 Streptococcus pneumoniae D39

53.247

98.089

0.522
  comX/comX2 Streptococcus pneumoniae Rx1

53.247

98.089

0.522
  comX/comX1 Streptococcus pneumoniae Rx1

53.247

98.089

0.522
  comX/comX1 Streptococcus pneumoniae D39

53.247

98.089

0.522
  comX/comX2 Streptococcus pneumoniae R6

53.247

98.089

0.522
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

53.247

98.089

0.522
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

52.597

98.089

0.516
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

52.597

98.089

0.516
  comX/sigX Streptococcus mutans UA159

48.718

99.363

0.484
  comX/sigX Streptococcus suis D9

48.387

98.726

0.478
  comX/sigX Streptococcus suis isolate S10

48.387

98.726

0.478
  comX/sigX Streptococcus suis P1/7

48.387

98.726

0.478
  comX Streptococcus salivarius SK126

44.805

98.089

0.439
  comX/sigX Streptococcus salivarius strain HSISS4

44.156

98.089

0.433
  comX Streptococcus thermophilus LMG 18311

44.156

98.089

0.433
  comX Streptococcus thermophilus LMD-9

44.156

98.089

0.433
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

38.462

99.363

0.382
  comX Streptococcus sobrinus strain NIDR 6715-7

38.562

97.452

0.376

Multiple sequence alignment