Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG329_RS29425 Genome accession   NZ_CP109422
Coordinates   6593979..6594584 (+) Length   201 a.a.
NCBI ID   WP_405802086.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01506     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 6588979..6599584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG329_RS29390 (OG329_29380) - 6589221..6589667 (+) 447 WP_405799424.1 HD domain-containing protein -
  OG329_RS29395 (OG329_29385) - 6589647..6590834 (-) 1188 WP_405799425.1 acyltransferase family protein -
  OG329_RS29400 (OG329_29390) - 6591288..6591482 (+) 195 WP_405799426.1 hypothetical protein -
  OG329_RS29405 (OG329_29395) - 6591504..6591689 (+) 186 WP_405799427.1 hypothetical protein -
  OG329_RS29420 (OG329_29410) tig 6592275..6593699 (+) 1425 WP_405799428.1 trigger factor -
  OG329_RS29425 (OG329_29415) clpP 6593979..6594584 (+) 606 WP_405802086.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG329_RS29430 (OG329_29420) clpP 6594637..6595323 (+) 687 WP_405799429.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG329_RS29435 (OG329_29425) clpX 6595471..6596763 (+) 1293 WP_405799430.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG329_RS29440 (OG329_29430) - 6596842..6597837 (-) 996 WP_405799431.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21124.95 Da        Isoelectric Point: 4.3926

>NTDB_id=676033 OG329_RS29425 WP_405802086.1 6593979..6594584(+) (clpP) [Streptomyces sp. NBC_01506]
MPYAAGEPSLGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAEPEKDIYLYINSPGGSVTAGMAVYDTMQY
IPNDVITIGMGMAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGLGGTASDIKIQAEQLLRTKKRMAEITARHTGQTEE
TIIRDGDRDRWFTAEEAVAYGIIDEIISAASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=676033 OG329_RS29425 WP_405802086.1 6593979..6594584(+) (clpP) [Streptomyces sp. NBC_01506]
ATGCCTTACGCCGCCGGTGAGCCGTCCCTCGGTGGTGGCCTCGGCGACCAGGTCTACAGCCGACTGCTCGGTGAGCGGAT
CATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTCCTTCTCCTCGCGGCCGAGCCCG
AGAAGGACATCTACCTCTACATCAACAGCCCCGGTGGTTCCGTCACGGCGGGCATGGCGGTCTACGACACCATGCAGTAC
ATCCCGAACGACGTGATCACCATCGGCATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTGACCGGCGGCACCGCCGG
CAAGCGCTTCGCGCTGCCCAACACCGACATCCTCATGCACCAGGGCTCCGCGGGCCTCGGTGGCACCGCCTCCGACATCA
AGATCCAGGCCGAGCAGTTGCTCCGTACGAAGAAGCGCATGGCCGAGATCACCGCGCGGCACACCGGTCAGACCGAGGAG
ACCATCATCCGCGACGGTGACCGCGACCGCTGGTTCACCGCCGAGGAGGCCGTGGCCTACGGCATCATCGACGAGATCAT
CTCCGCTGCTTCGGGTGTTCCGGGCGGCGGCGGCACCGGCGCCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

51.596

93.532

0.483
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.262

95.025

0.478
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.064

93.532

0.478
  clpP Bacillus subtilis subsp. subtilis str. 168

55.814

85.572

0.478
  clpP Streptococcus mutans UA159

53.179

86.07

0.458
  clpP Streptococcus pyogenes MGAS315

52.601

86.07

0.453
  clpP Streptococcus pyogenes JRS4

52.601

86.07

0.453
  clpP Streptococcus pneumoniae TIGR4

49.718

88.06

0.438
  clpP Streptococcus pneumoniae D39

49.718

88.06

0.438
  clpP Streptococcus pneumoniae R6

49.718

88.06

0.438
  clpP Streptococcus pneumoniae Rx1

49.718

88.06

0.438
  clpP Streptococcus thermophilus LMD-9

50.575

86.567

0.438
  clpP Streptococcus thermophilus LMG 18311

50.575

86.567

0.438