Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MUU77_RS04405 Genome accession   NZ_CP095187
Coordinates   963174..964430 (-) Length   418 a.a.
NCBI ID   WP_245094214.1    Uniprot ID   -
Organism   Pseudoxanthomonas sp. F37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 960408..975976 963174..964430 within 0


Gene organization within MGE regions


Location: 960408..975976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU77_RS04390 (MUU77_04390) - 960801..961226 (+) 426 WP_245092010.1 transposase -
  MUU77_RS04395 (MUU77_04395) coaE 961650..962267 (-) 618 WP_245092012.1 dephospho-CoA kinase -
  MUU77_RS04400 (MUU77_04400) pilD 962301..963164 (-) 864 WP_187573334.1 A24 family peptidase Machinery gene
  MUU77_RS04405 (MUU77_04405) pilC 963174..964430 (-) 1257 WP_245094214.1 type II secretion system F family protein Machinery gene
  MUU77_RS04410 (MUU77_04410) pilB 964728..966470 (-) 1743 WP_245092015.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MUU77_RS04415 (MUU77_04415) - 966685..967533 (+) 849 WP_245092019.1 glycosyltransferase family 2 protein -
  MUU77_RS04420 (MUU77_04420) - 967548..968777 (+) 1230 WP_245092023.1 glycosyltransferase family 4 protein -
  MUU77_RS04425 (MUU77_04425) - 968817..970007 (+) 1191 WP_245092025.1 oligosaccharide flippase family protein -
  MUU77_RS04430 (MUU77_04430) - 969988..971118 (-) 1131 WP_245092027.1 glycosyltransferase -
  MUU77_RS04435 (MUU77_04435) - 971125..971994 (-) 870 WP_245092029.1 FkbM family methyltransferase -
  MUU77_RS04440 (MUU77_04440) - 971991..972776 (-) 786 WP_245092031.1 class I SAM-dependent methyltransferase -
  MUU77_RS04445 (MUU77_04445) - 972879..973973 (+) 1095 WP_245092033.1 glycosyltransferase family 4 protein -
  MUU77_RS04450 (MUU77_04450) - 974030..975964 (-) 1935 WP_245092035.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 46036.30 Da        Isoelectric Point: 10.0860

>NTDB_id=676031 MUU77_RS04405 WP_245094214.1 963174..964430(-) (pilC) [Pseudoxanthomonas sp. F37]
MAVTRSAVKKAPAPVRENPLNLFVWEGTDKRGIKMKGEQSSKNANFLRAELRKQGITPTVVKVKPKPLFGSAGKPVTPKE
IAFFSRQLATMMKSGVPIVSALEIIEGGQKNVRMKKLVEEIRYDIESGSSLSEAISKHPVQFDELYRNLVRAGESAGVLE
TVLDTIASYKENIESLKGKIKKALFYPATVIAVAILVSAVLLIFVVPQFENVFKQFGADLPAFTQLIVNASRFMISYWWL
VFGGLAAAIFAFIFFKKRSLAFEHFIDRMTLKIPVIGQIMHNSSIARFARTLGVTFKAGVPLVEALDTVAGATGNTLYEK
AVHRIRDDVAVGYPLNMSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLIEPFIMIFIGAVV
GAMVIGMYLPIFKLAATM

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=676031 MUU77_RS04405 WP_245094214.1 963174..964430(-) (pilC) [Pseudoxanthomonas sp. F37]
ATGGCCGTCACCCGTTCCGCCGTCAAGAAAGCGCCCGCGCCCGTCCGCGAGAACCCGCTGAACCTGTTCGTCTGGGAAGG
CACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAATCGTCCAAGAACGCCAATTTCCTGCGCGCGGAGCTGCGCAAGC
AGGGCATCACCCCGACCGTGGTGAAGGTGAAGCCCAAGCCGCTGTTCGGCTCGGCGGGCAAGCCGGTGACGCCTAAGGAA
ATCGCCTTCTTCAGCCGCCAGCTGGCCACGATGATGAAGTCCGGCGTGCCCATCGTGAGCGCATTGGAGATCATCGAGGG
CGGGCAGAAGAACGTCCGCATGAAAAAGCTGGTGGAGGAGATCCGCTACGACATCGAGAGCGGCTCGTCGCTGTCCGAAG
CCATCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTCCGTGCCGGCGAAAGCGCAGGCGTGCTGGAG
ACGGTGCTGGACACCATCGCCAGCTACAAGGAGAACATCGAGAGCCTGAAGGGCAAGATCAAGAAGGCGTTGTTCTATCC
TGCAACGGTAATCGCCGTTGCTATCCTGGTCAGTGCGGTGCTGCTTATTTTCGTGGTGCCGCAGTTCGAGAATGTCTTCA
AACAATTCGGCGCCGACCTGCCTGCATTCACACAGCTGATCGTGAACGCCTCCCGCTTCATGATTTCATACTGGTGGCTG
GTTTTTGGCGGCTTGGCTGCCGCGATCTTCGCTTTCATCTTTTTCAAGAAGCGCTCGCTAGCCTTTGAGCACTTCATTGA
CCGCATGACCCTGAAGATTCCCGTGATCGGCCAGATCATGCACAACTCTTCGATTGCCCGTTTCGCGCGCACATTGGGTG
TGACCTTCAAGGCCGGCGTACCGCTGGTGGAAGCGTTGGACACGGTGGCGGGCGCTACCGGCAACACGCTGTATGAAAAG
GCGGTGCATCGTATTCGCGACGACGTAGCCGTGGGCTACCCTCTCAACATGTCGATGAAGCAGGTCAACCTGTTCCCGCA
CATGGTGATCCAGATGACCGCCATCGGCGAAGAAGCCGGCGCGCTGGATGCCATGCTGTTCAAGGTGGCCGAGTACTACG
AGCAGGAGGTGAACAATGCGGTGGATGCGCTGTCCAGCCTGATCGAACCCTTCATCATGATCTTCATCGGTGCCGTGGTC
GGCGCCATGGTGATCGGCATGTACCTGCCCATCTTCAAGCTTGCGGCGACGATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.523

95.215

0.519
  pilC Pseudomonas stutzeri DSM 10701

51.01

94.737

0.483
  pilC Acinetobacter baumannii D1279779

50.886

94.498

0.481
  pilC Acinetobacter baylyi ADP1

50.505

94.737

0.478
  pilG Neisseria gonorrhoeae MS11

44.051

94.498

0.416
  pilG Neisseria meningitidis 44/76-A

44.051

94.498

0.416
  pilC Vibrio cholerae strain A1552

40

95.694

0.383
  pilC Vibrio campbellii strain DS40M4

37.923

99.043

0.376