Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   MA850_RS00050 Genome accession   NZ_CP092034
Coordinates   14694..14933 (-) Length   79 a.a.
NCBI ID   WP_058001047.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 15516C     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 9694..19933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA850_RS00040 (MA850_00040) gltD 12640..14085 (+) 1446 WP_058001048.1 glutamate synthase subunit beta -
  MA850_RS00045 (MA850_00045) rnhB 14086..14661 (-) 576 WP_002857688.1 ribonuclease HII -
  MA850_RS00050 (MA850_00050) Cj0011c 14694..14933 (-) 240 WP_058001047.1 ComEA family DNA-binding protein Machinery gene
  MA850_RS00055 (MA850_00055) rrc 14998..15645 (-) 648 WP_002853081.1 ferritin family protein -
  MA850_RS00060 (MA850_00060) ilvD 15805..17481 (+) 1677 WP_052775791.1 dihydroxy-acid dehydratase -
  MA850_RS00065 (MA850_00065) - 17493..17889 (-) 397 Protein_12 DUF1440 domain-containing protein -
  MA850_RS00070 (MA850_00070) - 17981..19207 (-) 1227 WP_002855588.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 8838.48 Da        Isoelectric Point: 10.1677

>NTDB_id=655250 MA850_RS00050 WP_058001047.1 14694..14933(-) (Cj0011c) [Campylobacter jejuni subsp. jejuni strain 15516C]
MKKLLFLFFALTAFLFGAVNINTATLKDLKSLNGIGEAKAKAILEYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITIE

Nucleotide


Download         Length: 240 bp        

>NTDB_id=655250 MA850_RS00050 WP_058001047.1 14694..14933(-) (Cj0011c) [Campylobacter jejuni subsp. jejuni strain 15516C]
ATGAAAAAATTACTATTTTTATTTTTTGCTTTAACGGCTTTTCTCTTTGGTGCTGTAAATATCAACACTGCAACACTAAA
AGATTTAAAAAGTTTAAATGGTATTGGCGAAGCTAAGGCTAAAGCGATTTTAGAATACCGCAAAGAAGCAAATTTTACAA
GTATTGATGATCTTAAAAAAGTTAAAGGCATAGGTGATAAGCTTTTTGAAAAAATCAAAAATGATATCACAATAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.734

100

0.987
  comE Neisseria gonorrhoeae MS11

50.617

100

0.519
  comE Neisseria gonorrhoeae MS11

50.617

100

0.519
  comE Neisseria gonorrhoeae MS11

50.617

100

0.519
  comE Neisseria gonorrhoeae MS11

50.617

100

0.519
  comEA Bacillus subtilis subsp. subtilis str. 168

55.738

77.215

0.43
  comEA Acinetobacter baylyi ADP1

55.738

77.215

0.43
  comEA Staphylococcus aureus MW2

55.738

77.215

0.43
  comEA Staphylococcus aureus N315

55.738

77.215

0.43
  comEA Lactococcus lactis subsp. cremoris KW2

51.613

78.481

0.405
  comEA Vibrio cholerae strain A1552

60.784

64.557

0.392
  comEA Vibrio cholerae C6706

60.784

64.557

0.392
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.619

79.747

0.38
  comEA/celA/cilE Streptococcus pneumoniae D39

47.619

79.747

0.38
  comEA/celA/cilE Streptococcus pneumoniae R6

47.619

79.747

0.38
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.619

79.747

0.38
  comEA/comE1 Glaesserella parasuis strain SC1401

47.619

79.747

0.38
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

47.619

79.747

0.38
  comE1/comEA Haemophilus influenzae Rd KW20

49.153

74.684

0.367
  comEA/celA/cilE Streptococcus mitis SK321

46.032

79.747

0.367
  comEA Acinetobacter baumannii D1279779

46.032

79.747

0.367