Detailed information    

insolico Bioinformatically predicted

Overview


Name   comR/comR2   Type   Regulator
Locus tag   ANG_RS01565 Genome accession   NZ_AP013072
Coordinates   283894..284367 (+) Length   157 a.a.
NCBI ID   WP_020999414.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. whileyi MAS624     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 278894..289367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANG_RS01535 (ANG_0288) - 280189..280827 (+) 639 WP_003034799.1 adenylate kinase -
  ANG_RS01540 (ANG_0289) infA 280943..281161 (+) 219 WP_001029883.1 translation initiation factor IF-1 -
  ANG_RS10815 rpmJ 281186..281302 (+) 117 WP_001808836.1 50S ribosomal protein L36 -
  ANG_RS01545 (ANG_0290) rpsM 281318..281683 (+) 366 WP_002262317.1 30S ribosomal protein S13 -
  ANG_RS01550 (ANG_0291) rpsK 281703..282086 (+) 384 WP_001118385.1 30S ribosomal protein S11 -
  ANG_RS01555 (ANG_0292) - 282131..283069 (+) 939 WP_003026514.1 DNA-directed RNA polymerase subunit alpha -
  ANG_RS01560 (ANG_0293) rplQ 283081..283467 (+) 387 WP_003026513.1 50S ribosomal protein L17 -
  ANG_RS01565 (ANG_0294) comR/comR2 283894..284367 (+) 474 WP_020999414.1 sigma-70 family RNA polymerase sigma factor Regulator
  ANG_RS01570 (ANG_0295) rpsB 284600..285382 (+) 783 WP_003036542.1 30S ribosomal protein S2 -
  ANG_RS01575 (ANG_0296) tsf 285465..286508 (+) 1044 WP_003026508.1 translation elongation factor Ts -
  ANG_RS01580 (ANG_0297) - 286595..286945 (-) 351 WP_003036598.1 hypothetical protein -
  ANG_RS01585 (ANG_0298) - 287204..287665 (+) 462 WP_003036579.1 CtsR family transcriptional regulator -

Sequence


Protein


Download         Length: 157 a.a.        Molecular weight: 19214.03 Da        Isoelectric Point: 6.2636

>NTDB_id=65501 ANG_RS01565 WP_020999414.1 283894..284367(+) (comR/comR2) [Streptococcus anginosus subsp. whileyi MAS624]
MEFKELYAKVRGIVLKCCREYYVHLWELSDWDQEGMLVLYQLVSQYPQLVEEESQLYVYYKTKFRNHILDILRKQESQKR
KLDRQAYEEVSEIGHKLSLKELYLDELVILRDQLKSYQAQLSPEKQEQYERLLADERFKGRQAMIRELRAYLKDYSD

Nucleotide


Download         Length: 474 bp        

>NTDB_id=65501 ANG_RS01565 WP_020999414.1 283894..284367(+) (comR/comR2) [Streptococcus anginosus subsp. whileyi MAS624]
ATGGAGTTCAAGGAGTTATATGCCAAGGTGAGAGGAATTGTACTAAAGTGCTGTCGGGAATATTATGTCCACCTGTGGGA
GTTAAGTGATTGGGACCAAGAGGGAATGTTGGTGCTCTATCAGTTGGTAAGCCAGTATCCGCAGCTGGTAGAAGAAGAAA
GTCAGCTCTATGTTTACTATAAGACCAAGTTCCGGAATCATATCCTGGACATCCTCCGTAAACAGGAAAGTCAAAAACGC
AAACTTGATCGTCAAGCTTATGAAGAAGTGAGCGAGATTGGTCACAAGCTCAGCCTAAAAGAACTATATCTGGATGAATT
GGTGATTCTCCGAGACCAGCTAAAGAGCTATCAAGCTCAACTGAGCCCAGAGAAACAGGAGCAGTACGAGCGCTTACTAG
CCGATGAACGGTTCAAAGGCCGCCAAGCTATGATTCGAGAATTAAGAGCCTACTTAAAAGATTATAGTGATTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599

  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599

  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

53.896

98.089

0.529

  comX/comX2 Streptococcus pneumoniae Rx1

53.247

98.089

0.522

  comX/comX1 Streptococcus pneumoniae Rx1

53.247

98.089

0.522

  comX/comX2 Streptococcus pneumoniae D39

53.247

98.089

0.522

  comX/comX1 Streptococcus pneumoniae D39

53.247

98.089

0.522

  comX/comX2 Streptococcus pneumoniae R6

53.247

98.089

0.522

  comX/comX1 Streptococcus pneumoniae R6

53.247

98.089

0.522

  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

53.247

98.089

0.522

  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

52.597

98.089

0.516

  comX/comX2 Streptococcus pneumoniae TIGR4

52.597

98.089

0.516

  comX/comX1 Streptococcus pneumoniae TIGR4

52.597

98.089

0.516

  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

52.597

98.089

0.516

  comX/sigX Streptococcus mutans UA159

48.718

99.363

0.484

  comX/sigX Streptococcus suis D9

47.742

98.726

0.471

  comX/sigX Streptococcus suis isolate S10

47.742

98.726

0.471

  comX/sigX Streptococcus suis P1/7

47.742

98.726

0.471

  comX Streptococcus salivarius SK126

44.156

98.089

0.433

  comX/sigX Streptococcus salivarius strain HSISS4

43.506

98.089

0.427

  comX Streptococcus thermophilus LMG 18311

43.506

98.089

0.427

  comX Streptococcus thermophilus LMD-9

43.506

98.089

0.427

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.308

99.363

0.42

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.308

99.363

0.42

  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.308

99.363

0.42

  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.308

99.363

0.42

  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

37.821

99.363

0.376

  comX Streptococcus sobrinus strain NIDR 6715-7

38.562

97.452

0.376


Multiple sequence alignment