Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | LT988_RS13605 | Genome accession | NZ_CP089309 |
| Coordinates | 3001971..3003008 (+) | Length | 345 a.a. |
| NCBI ID | WP_232406109.1 | Uniprot ID | - |
| Organism | Thiocapsa bogorovii strain BBS | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2996971..3008008
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT988_RS13575 (LT988_13575) | - | 2997123..2998046 (+) | 924 | WP_232406103.1 | hypothetical protein | - |
| LT988_RS13580 (LT988_13580) | - | 2997946..2998590 (-) | 645 | WP_232406104.1 | LUD domain-containing protein | - |
| LT988_RS13585 (LT988_13585) | - | 2998587..2999996 (-) | 1410 | WP_232406105.1 | LutB/LldF family L-lactate oxidation iron-sulfur protein | - |
| LT988_RS13590 (LT988_13590) | - | 3000181..3000618 (-) | 438 | WP_232406106.1 | type II toxin-antitoxin system VapC family toxin | - |
| LT988_RS13595 (LT988_13595) | - | 3000605..3000865 (-) | 261 | WP_232406107.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| LT988_RS13600 (LT988_13600) | - | 3001024..3001800 (-) | 777 | WP_232406108.1 | (Fe-S)-binding protein | - |
| LT988_RS13605 (LT988_13605) | pilT | 3001971..3003008 (+) | 1038 | WP_232406109.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| LT988_RS13610 (LT988_13610) | pilU | 3003165..3004322 (+) | 1158 | WP_232406110.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| LT988_RS13615 (LT988_13615) | - | 3004386..3005291 (+) | 906 | WP_232406111.1 | TIGR00730 family Rossman fold protein | - |
| LT988_RS13620 (LT988_13620) | - | 3005305..3007575 (+) | 2271 | WP_232406112.1 | TonB-dependent receptor | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38317.08 Da Isoelectric Point: 7.0361
>NTDB_id=636350 LT988_RS13605 WP_232406109.1 3001971..3003008(+) (pilT) [Thiocapsa bogorovii strain BBS]
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDMRRINVPPLEHRSVHSLVYDIMNDKQRKDYEEFLETDFSFEIPGLAR
FRVNAFNQKRGAGAVFRTIPSKVLSLEELNAPESFKDIVNVPRGLILVTGPTGSGKSTTLAAMVDYLNETEYAHILTIED
PIEFVHTSKKCLVNQREVHRDTLGFSEALRSALRQDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRI
IDVFPAAEKEMIRAMLSESLRSVIAQTLLKRVGGGRVAAHEIMIGTPAIRNLIREAKVAQMYSAIQTGQAHGMQTLDQNL
KELVQQGLVSRKDARMKAQNKDGFT
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDMRRINVPPLEHRSVHSLVYDIMNDKQRKDYEEFLETDFSFEIPGLAR
FRVNAFNQKRGAGAVFRTIPSKVLSLEELNAPESFKDIVNVPRGLILVTGPTGSGKSTTLAAMVDYLNETEYAHILTIED
PIEFVHTSKKCLVNQREVHRDTLGFSEALRSALRQDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRI
IDVFPAAEKEMIRAMLSESLRSVIAQTLLKRVGGGRVAAHEIMIGTPAIRNLIREAKVAQMYSAIQTGQAHGMQTLDQNL
KELVQQGLVSRKDARMKAQNKDGFT
Nucleotide
Download Length: 1038 bp
>NTDB_id=636350 LT988_RS13605 WP_232406109.1 3001971..3003008(+) (pilT) [Thiocapsa bogorovii strain BBS]
GTGGATATCGCCGAGCTACTGGCTTTCAGCGTCAAGAACAACGCCTCGGACCTGCACCTTTCGGCTGGCTTGCCGCCGAT
GATCCGTGTCGACGGCGACATGCGCCGCATCAATGTCCCACCGCTCGAGCATCGCTCGGTGCACTCGCTTGTCTACGACA
TCATGAACGACAAGCAGCGCAAGGACTACGAGGAGTTCCTGGAAACGGACTTCTCGTTCGAAATCCCGGGTCTGGCCCGC
TTCCGCGTCAACGCCTTCAACCAGAAGCGCGGCGCCGGTGCGGTTTTTCGGACCATCCCCTCGAAGGTCTTGTCGCTCGA
AGAGCTGAACGCGCCCGAGAGCTTCAAAGACATCGTCAATGTCCCGCGCGGCCTCATCCTGGTGACCGGGCCGACCGGCT
CGGGAAAGTCCACGACCCTTGCGGCGATGGTCGACTATCTCAACGAGACCGAGTACGCGCACATCCTCACCATCGAGGAC
CCGATCGAGTTCGTGCATACCAGCAAGAAATGTCTCGTCAATCAGCGCGAGGTTCACCGCGACACGCTCGGCTTCAGCGA
GGCGTTGCGCTCCGCGTTGCGTCAGGATCCGGACATCATCCTGGTCGGCGAGATGCGTGATCTGGAAACCATTCGGCTGG
CGATGACCGCGGCCGAAACCGGACATCTGGTCTTCGGGACGCTGCACACCACTTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTCTTCCCAGCGGCGGAGAAGGAGATGATCCGCGCGATGCTTTCGGAGTCTCTGCGCTCGGTCATCGCGCAGAC
GCTGTTGAAGCGCGTCGGCGGCGGGCGGGTTGCCGCGCACGAGATTATGATCGGCACCCCGGCCATCCGTAACCTGATCC
GCGAGGCCAAGGTGGCCCAGATGTATTCGGCGATCCAGACCGGACAGGCGCACGGCATGCAGACGCTGGATCAGAACCTC
AAGGAACTGGTCCAACAGGGCCTGGTGTCACGCAAAGACGCCCGGATGAAGGCCCAGAACAAGGACGGTTTTACCTGA
GTGGATATCGCCGAGCTACTGGCTTTCAGCGTCAAGAACAACGCCTCGGACCTGCACCTTTCGGCTGGCTTGCCGCCGAT
GATCCGTGTCGACGGCGACATGCGCCGCATCAATGTCCCACCGCTCGAGCATCGCTCGGTGCACTCGCTTGTCTACGACA
TCATGAACGACAAGCAGCGCAAGGACTACGAGGAGTTCCTGGAAACGGACTTCTCGTTCGAAATCCCGGGTCTGGCCCGC
TTCCGCGTCAACGCCTTCAACCAGAAGCGCGGCGCCGGTGCGGTTTTTCGGACCATCCCCTCGAAGGTCTTGTCGCTCGA
AGAGCTGAACGCGCCCGAGAGCTTCAAAGACATCGTCAATGTCCCGCGCGGCCTCATCCTGGTGACCGGGCCGACCGGCT
CGGGAAAGTCCACGACCCTTGCGGCGATGGTCGACTATCTCAACGAGACCGAGTACGCGCACATCCTCACCATCGAGGAC
CCGATCGAGTTCGTGCATACCAGCAAGAAATGTCTCGTCAATCAGCGCGAGGTTCACCGCGACACGCTCGGCTTCAGCGA
GGCGTTGCGCTCCGCGTTGCGTCAGGATCCGGACATCATCCTGGTCGGCGAGATGCGTGATCTGGAAACCATTCGGCTGG
CGATGACCGCGGCCGAAACCGGACATCTGGTCTTCGGGACGCTGCACACCACTTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTCTTCCCAGCGGCGGAGAAGGAGATGATCCGCGCGATGCTTTCGGAGTCTCTGCGCTCGGTCATCGCGCAGAC
GCTGTTGAAGCGCGTCGGCGGCGGGCGGGTTGCCGCGCACGAGATTATGATCGGCACCCCGGCCATCCGTAACCTGATCC
GCGAGGCCAAGGTGGCCCAGATGTATTCGGCGATCCAGACCGGACAGGCGCACGGCATGCAGACGCTGGATCAGAACCTC
AAGGAACTGGTCCAACAGGGCCTGGTGTCACGCAAAGACGCCCGGATGAAGGCCCAGAACAAGGACGGTTTTACCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.