NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	KM317_RS14490	Genome accession	NZ_CP086333
Coordinates	3517848..3518273 (-)	Length	141 a.a.
NCBI ID	WP_053833734.1	Uniprot ID	A0A0K2ZC44
Organism	Xanthomonas translucens pv. arrhenatheri strain LMG 727
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3512848..3523273

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KM317_RS14465 (KM317_14465)	pilR	3513152..3514540 (+)	1389	WP_053833737.1	sigma-54-dependent transcriptional regulator	Regulator
KM317_RS14470 (KM317_14470)	-	3514705..3515001 (+)	297	WP_053833736.1	type II toxin-antitoxin system RelE/ParE family toxin	-
KM317_RS14475 (KM317_14475)	-	3515004..3515297 (+)	294	WP_009580422.1	addiction module antidote protein	-
KM317_RS14480 (KM317_14480)	pilB	3515325..3517061 (-)	1737	WP_053833735.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KM317_RS14485 (KM317_14485)	-	3517249..3517692 (+)	444	WP_186008602.1	hypothetical protein	-
KM317_RS14490 (KM317_14490)	pilA	3517848..3518273 (-)	426	WP_053833734.1	pilin	Machinery gene
KM317_RS14495 (KM317_14495)	pilC	3518654..3519913 (+)	1260	WP_053833733.1	type II secretion system F family protein	Machinery gene
KM317_RS14500 (KM317_14500)	-	3519920..3520783 (+)	864	WP_053833732.1	prepilin peptidase	-
KM317_RS14505 (KM317_14505)	coaE	3520797..3521417 (+)	621	WP_053833731.1	dephospho-CoA kinase	-
KM317_RS14510 (KM317_14510)	-	3521540..3522874 (-)	1335	WP_053833730.1	sensor histidine kinase	-

Sequence

Protein

Download Length: 141 a.a. Molecular weight: 14829.22 Da Isoelectric Point: 8.1004

                                >NTDB_id=624360 KM317_RS14490 WP_053833734.1 3517848..3518273(-) (pilA) [Xanthomonas translucens pv. arrhenatheri strain LMG 727]

MKKQQGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQVTAGLAEITPGKTQYEVALNEGKTSITNIADLGLKNSDRCTI

GAITALSATGTIECTLKGNTKIINKKVTLTRSDDGTWACTVSSDMPAKYIPSGCNTATPAS

Nucleotide

Download Length: 426 bp

                                >NTDB_id=624360 KM317_RS14490 WP_053833734.1 3517848..3518273(-) (pilA) [Xanthomonas translucens pv. arrhenatheri strain LMG 727]

ATGAAGAAGCAACAGGGCTTTACGCTGATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATTGCGCT

GCCGATGTATCAGGATTATGTTGCCAAGTCGCAGGTCACCGCCGGCTTAGCTGAAATTACCCCTGGCAAAACTCAGTATG

AGGTTGCCCTGAATGAAGGGAAGACTTCGATTACTAATATCGCTGACCTGGGCCTCAAGAATTCCGATCGTTGCACTATC

GGTGCGATCACTGCCCTCTCTGCTACCGGTACTATCGAATGCACGCTGAAGGGTAATACTAAAATTATTAACAAGAAAGT

TACTCTGACCCGTTCTGACGATGGTACTTGGGCATGCACGGTGAGTTCGGATATGCCAGCTAAGTACATTCCGAGCGGTT

GCAACACCGCTACTCCGGCATCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-135)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0K2ZC44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Acinetobacter baumannii strain A118	54.167	100	0.553
pilA/pilAI	Pseudomonas stutzeri DSM 10701	52.174	97.872	0.511
pilA	Pseudomonas aeruginosa PAK	45.033	100	0.482
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	34.054	100	0.447
pilA/pilAII	Pseudomonas stutzeri DSM 10701	44.526	97.163	0.433
pilA2	Legionella pneumophila strain ERS1305867	41.958	100	0.426
comP	Acinetobacter baylyi ADP1	39.189	100	0.411
pilA2	Legionella pneumophila str. Paris	39.855	97.872	0.39
pilE	Neisseria gonorrhoeae MS11	33.75	100	0.383
pilA	Vibrio cholerae C6706	36.986	100	0.383
pilA	Vibrio cholerae strain A1552	36.986	100	0.383
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	36.986	100	0.383
pilA	Vibrio parahaemolyticus RIMD 2210633	43.548	87.943	0.383
pilE	Neisseria gonorrhoeae strain FA1090	32.335	100	0.383
pilA/pilA1	Eikenella corrodens VA1	35.333	100	0.376

Detailed information NTG0624360