Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KM317_RS14465 Genome accession   NZ_CP086333
Coordinates   3513152..3514540 (+) Length   462 a.a.
NCBI ID   WP_053833737.1    Uniprot ID   A0A0K2ZBK1
Organism   Xanthomonas translucens pv. arrhenatheri strain LMG 727     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3508152..3519540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM317_RS14450 (KM317_14450) sucD 3509161..3510033 (-) 873 WP_009580520.1 succinate--CoA ligase subunit alpha -
  KM317_RS14455 (KM317_14455) sucC 3510057..3511220 (-) 1164 WP_053833739.1 ADP-forming succinate--CoA ligase subunit beta -
  KM317_RS14460 (KM317_14460) - 3511464..3513077 (+) 1614 WP_053833738.1 sensor histidine kinase -
  KM317_RS14465 (KM317_14465) pilR 3513152..3514540 (+) 1389 WP_053833737.1 sigma-54-dependent transcriptional regulator Regulator
  KM317_RS14470 (KM317_14470) - 3514705..3515001 (+) 297 WP_053833736.1 type II toxin-antitoxin system RelE/ParE family toxin -
  KM317_RS14475 (KM317_14475) - 3515004..3515297 (+) 294 WP_009580422.1 addiction module antidote protein -
  KM317_RS14480 (KM317_14480) pilB 3515325..3517061 (-) 1737 WP_053833735.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KM317_RS14485 (KM317_14485) - 3517249..3517692 (+) 444 WP_186008602.1 hypothetical protein -
  KM317_RS14490 (KM317_14490) pilA 3517848..3518273 (-) 426 WP_053833734.1 pilin Machinery gene

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49769.18 Da        Isoelectric Point: 6.5828

>NTDB_id=624358 KM317_RS14465 WP_053833737.1 3513152..3514540(+) (pilR) [Xanthomonas translucens pv. arrhenatheri strain LMG 727]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=624358 KM317_RS14465 WP_053833737.1 3513152..3514540(+) (pilR) [Xanthomonas translucens pv. arrhenatheri strain LMG 727]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAGCTGGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCATTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAGTTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGATCGAAGTGCCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTAGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCGCGCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGAATGGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2ZBK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.527

99.351

0.621
  pilR Acinetobacter baumannii strain A118

46.868

100

0.47