Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KM317_RS14495 Genome accession   NZ_CP086333
Coordinates   3518654..3519913 (+) Length   419 a.a.
NCBI ID   WP_053833733.1    Uniprot ID   A0A0K2ZBK0
Organism   Xanthomonas translucens pv. arrhenatheri strain LMG 727     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3513654..3524913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM317_RS14470 (KM317_14470) - 3514705..3515001 (+) 297 WP_053833736.1 type II toxin-antitoxin system RelE/ParE family toxin -
  KM317_RS14475 (KM317_14475) - 3515004..3515297 (+) 294 WP_009580422.1 addiction module antidote protein -
  KM317_RS14480 (KM317_14480) pilB 3515325..3517061 (-) 1737 WP_053833735.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KM317_RS14485 (KM317_14485) - 3517249..3517692 (+) 444 WP_186008602.1 hypothetical protein -
  KM317_RS14490 (KM317_14490) pilA 3517848..3518273 (-) 426 WP_053833734.1 pilin Machinery gene
  KM317_RS14495 (KM317_14495) pilC 3518654..3519913 (+) 1260 WP_053833733.1 type II secretion system F family protein Machinery gene
  KM317_RS14500 (KM317_14500) - 3519920..3520783 (+) 864 WP_053833732.1 prepilin peptidase -
  KM317_RS14505 (KM317_14505) coaE 3520797..3521417 (+) 621 WP_053833731.1 dephospho-CoA kinase -
  KM317_RS14510 (KM317_14510) - 3521540..3522874 (-) 1335 WP_053833730.1 sensor histidine kinase -
  KM317_RS14515 (KM317_14515) - 3522867..3523544 (-) 678 WP_003466405.1 response regulator transcription factor -
  KM317_RS14520 (KM317_14520) - 3523643..3523837 (-) 195 WP_231103461.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45508.62 Da        Isoelectric Point: 10.1825

>NTDB_id=624361 KM317_RS14495 WP_053833733.1 3518654..3519913(+) (pilC) [Xanthomonas translucens pv. arrhenatheri strain LMG 727]
MSATRSAVSKEPVARNTSQQVPFVWEGTDKRGIKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGSKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMGVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWL
LLIVLVGSIVGFVFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=624361 KM317_RS14495 WP_053833733.1 3518654..3519913(+) (pilC) [Xanthomonas translucens pv. arrhenatheri strain LMG 727]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCAATACCAGCCAGCAGGTCCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACGCCGTCGGTGGTCAAGCCGAAACCCAAGCCCCTGTTCGGCGCCGCCGGCAGCAAGATCAGCGCGAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAGATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGACAGGTCCGCACGGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGATGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGCGTACTCGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAGGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCGGTCATGGGTGTGGCGCTCCTGGTCAGTTCGATCTTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCAGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTGGCTTATTGGTGGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCGTCTTCGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CCGACTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCCGTGGCCCGCTTCTCGCGGACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAAAAG
GCCGTACTGCGCATGCGTGACGACGTGTCGGTCGGCTACCCGGTCAACGTGGCGATGAAGCAGACCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAAGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTAGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2ZBK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Legionella pneumophila strain ERS1305867

51.98

96.42

0.501
  pilC Acinetobacter baylyi ADP1

50.735

97.375

0.494
  pilC Acinetobacter baumannii D1279779

50.245

97.375

0.489
  pilC Vibrio cholerae strain A1552

42.469

96.659

0.41
  pilG Neisseria gonorrhoeae MS11

42.965

94.988

0.408
  pilG Neisseria meningitidis 44/76-A

42.356

95.227

0.403
  pilC Vibrio campbellii strain DS40M4

40.05

94.749

0.379
  pilC Thermus thermophilus HB27

38.75

95.465

0.37