Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   LK450_RS07790 Genome accession   NZ_CP085939
Coordinates   1571612..1572085 (+) Length   157 a.a.
NCBI ID   WP_003031176.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1566612..1577085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK450_RS07755 (LK450_07755) - 1567907..1568545 (+) 639 WP_003031144.1 adenylate kinase -
  LK450_RS07760 (LK450_07760) infA 1568661..1568879 (+) 219 WP_001029883.1 translation initiation factor IF-1 -
  LK450_RS07765 (LK450_07765) rpmJ 1568904..1569020 (+) 117 WP_001808836.1 50S ribosomal protein L36 -
  LK450_RS07770 (LK450_07770) rpsM 1569036..1569401 (+) 366 WP_002262317.1 30S ribosomal protein S13 -
  LK450_RS07775 (LK450_07775) rpsK 1569421..1569804 (+) 384 WP_001118385.1 30S ribosomal protein S11 -
  LK450_RS07780 (LK450_07780) - 1569849..1570787 (+) 939 WP_003029466.1 DNA-directed RNA polymerase subunit alpha -
  LK450_RS07785 (LK450_07785) rplQ 1570799..1571185 (+) 387 WP_003026513.1 50S ribosomal protein L17 -
  LK450_RS07790 (LK450_07790) comR/comR2 1571612..1572085 (+) 474 WP_003031176.1 sigma-70 family RNA polymerase sigma factor Regulator
  LK450_RS07795 (LK450_07795) rpsB 1572318..1573100 (+) 783 WP_003026510.1 30S ribosomal protein S2 -
  LK450_RS07800 (LK450_07800) tsf 1573183..1574226 (+) 1044 WP_003031142.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19267.07 Da        Isoelectric Point: 6.7309

>NTDB_id=621425 LK450_RS07790 WP_003031176.1 1571612..1572085(+) (comR/comR2) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
MEFKELYGKVRGIVLKCRREYYVHLWELSDWEQEGMLVLYQLVSQYPQLVEEESQLYVYYKTKFRNHILDILRKQESQKR
KLDRQAYEEVSEIGHKLSLKELYLDELVILRDQLKSYQAQLSPEKQEQYERLLADERFKGRQAMIRELRAYLKDYSD

Nucleotide


Download         Length: 474 bp        

>NTDB_id=621425 LK450_RS07790 WP_003031176.1 1571612..1572085(+) (comR/comR2) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
ATGGAGTTCAAGGAGTTATATGGCAAGGTAAGAGGAATTGTGCTGAAGTGTCGGAGGGAATATTATGTCCACCTGTGGGA
ATTAAGCGATTGGGAACAAGAGGGGATGTTGGTGCTCTATCAGTTGGTAAGCCAGTATCCGCAGCTGGTAGAAGAAGAAA
GTCAGCTCTATGTTTACTATAAGACCAAGTTCCGCAATCATATTCTGGACATCCTCCGTAAACAGGAAAGTCAAAAACGC
AAACTCGATCGTCAAGCTTATGAAGAAGTGAGCGAGATTGGTCACAAGCTCAGCCTAAAAGAACTATATCTGGATGAATT
GGTGATTCTCCGAGACCAGCTAAAGAGCTATCAAGCTCAACTGAGCCCAGAGAAACAGGAGCAGTACGAGCGCTTACTAG
CCGATGAACGGTTCAAAGGCCGCCAAGCCATGATTCGAGAATTAAGAGCCTACTTAAAAGATTATAGTGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae TIGR4

53.896

98.089

0.529
  comX/comX1 Streptococcus pneumoniae TIGR4

53.896

98.089

0.529
  comX/comX1 Streptococcus pneumoniae R6

53.247

98.089

0.522
  comX/comX2 Streptococcus pneumoniae D39

53.247

98.089

0.522
  comX/comX2 Streptococcus pneumoniae Rx1

53.247

98.089

0.522
  comX/comX1 Streptococcus pneumoniae Rx1

53.247

98.089

0.522
  comX/comX1 Streptococcus pneumoniae D39

53.247

98.089

0.522
  comX/comX2 Streptococcus pneumoniae R6

53.247

98.089

0.522
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

53.247

98.089

0.522
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

52.597

98.089

0.516
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

52.597

98.089

0.516
  comX/sigX Streptococcus mutans UA159

48.718

99.363

0.484
  comX/sigX Streptococcus suis D9

48.387

98.726

0.478
  comX/sigX Streptococcus suis isolate S10

48.387

98.726

0.478
  comX/sigX Streptococcus suis P1/7

48.387

98.726

0.478
  comX Streptococcus salivarius SK126

44.805

98.089

0.439
  comX/sigX Streptococcus salivarius strain HSISS4

44.156

98.089

0.433
  comX Streptococcus thermophilus LMG 18311

44.156

98.089

0.433
  comX Streptococcus thermophilus LMD-9

44.156

98.089

0.433
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

38.462

99.363

0.382
  comX Streptococcus sobrinus strain NIDR 6715-7

38.562

97.452

0.376