Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LIT24_RS09790 Genome accession   NZ_CP085406
Coordinates   1891107..1891394 (+) Length   95 a.a.
NCBI ID   WP_000648325.1    Uniprot ID   A0A9W5QIM5
Organism   Bacillus bombysepticus strain F12     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1886107..1896394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS09770 (LIT24_09770) - 1887283..1887480 (+) 198 WP_001048101.1 DUF4083 domain-containing protein -
  LIT24_RS09775 (LIT24_09775) - 1887512..1887973 (+) 462 WP_000024999.1 NUDIX hydrolase -
  LIT24_RS09780 (LIT24_09780) nadE 1888023..1888841 (-) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  LIT24_RS09785 (LIT24_09785) - 1889111..1890991 (+) 1881 WP_001026001.1 ABC transporter permease -
  LIT24_RS09790 (LIT24_09790) abrB 1891107..1891394 (+) 288 WP_000648325.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LIT24_RS09795 (LIT24_09795) - 1891671..1892618 (+) 948 WP_000099756.1 serine protease -
  LIT24_RS09800 (LIT24_09800) - 1892667..1893005 (+) 339 Protein_1850 MFS transporter permease -
  LIT24_RS29935 - 1893054..1893260 (+) 207 WP_001101740.1 hypothetical protein -
  LIT24_RS09805 (LIT24_09805) - 1893300..1893524 (-) 225 WP_000162602.1 hypothetical protein -
  LIT24_RS09810 (LIT24_09810) - 1893609..1893956 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  LIT24_RS09815 (LIT24_09815) - 1894153..1894694 (+) 542 Protein_1854 DinB family protein -
  LIT24_RS09820 (LIT24_09820) rsgA 1894862..1895914 (+) 1053 WP_001073075.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10529.28 Da        Isoelectric Point: 5.1367

>NTDB_id=617819 LIT24_RS09790 WP_000648325.1 1891107..1891394(+) (abrB) [Bacillus bombysepticus strain F12]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSGQNITLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=617819 LIT24_RS09790 WP_000648325.1 1891107..1891394(+) (abrB) [Bacillus bombysepticus strain F12]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGGGCAGAATATTACATTAGCAAATGGAAATATTACAGTTGGCATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526