Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   K6974_RS00475 Genome accession   NZ_CP082204
Coordinates   82905..83375 (+) Length   156 a.a.
NCBI ID   WP_222337304.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 77905..88375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS00450 (K6974_00440) - 78776..80530 (-) 1755 WP_392338944.1 IS1634 family transposase -
  K6974_RS00455 (K6974_00445) - 80783..81049 (+) 267 WP_004195477.1 IreB family regulatory phosphoprotein -
  K6974_RS00460 (K6974_00450) ruvX 81049..81468 (+) 420 WP_079267687.1 Holliday junction resolvase RuvX -
  K6974_RS00465 (K6974_00455) - 81480..81797 (+) 318 WP_004195480.1 DUF1292 domain-containing protein -
  K6974_RS00470 (K6974_00460) - 82266..82811 (+) 546 WP_261311708.1 nucleotidyltransferase family protein -
  K6974_RS00475 (K6974_00465) comX/sigX 82905..83375 (+) 471 WP_222337304.1 sigma-70 family RNA polymerase sigma factor Regulator
  K6974_RS00480 (K6974_00470) rpsJ 83629..83937 (+) 309 WP_002939332.1 30S ribosomal protein S10 -
  K6974_RS00485 (K6974_00475) rplC 84151..84777 (+) 627 WP_024415739.1 50S ribosomal protein L3 -
  K6974_RS00490 (K6974_00480) rplD 84802..85425 (+) 624 WP_004195490.1 50S ribosomal protein L4 -
  K6974_RS00495 (K6974_00485) - 85425..85724 (+) 300 WP_004195491.1 50S ribosomal protein L23 -
  K6974_RS00500 (K6974_00490) rplB 85742..86575 (+) 834 WP_002936663.1 50S ribosomal protein L2 -
  K6974_RS00505 (K6974_00495) rpsS 86826..87107 (+) 282 WP_000533766.1 30S ribosomal protein S19 -
  K6974_RS00510 (K6974_00500) rplV 87125..87469 (+) 345 WP_002936662.1 50S ribosomal protein L22 -
  K6974_RS00515 (K6974_00505) rpsC 87482..88135 (+) 654 WP_002936661.1 30S ribosomal protein S3 -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 19261.03 Da        Isoelectric Point: 7.8626

>NTDB_id=599964 K6974_RS00475 WP_222337304.1 82905..83375(+) (comX/sigX) [Streptococcus suis strain FJSM5]
MKFEKVYDSVKGIVNKARKEFYIKLWDREDWDQEGMMTLFELLEDQPWLADEQEQLYCYFKVKFRNRVKDRVRRQESQKR
KFDRMPHEDIHDLSHVIQSPGLVNDELLMLRSALRDYRKNLSDDQLENYEKLISGQCFRGRREMIRDLQIYLKDFR

Nucleotide


Download         Length: 471 bp        

>NTDB_id=599964 K6974_RS00475 WP_222337304.1 82905..83375(+) (comX/sigX) [Streptococcus suis strain FJSM5]
ATGAAATTTGAAAAGGTCTATGATAGCGTAAAAGGGATTGTCAACAAGGCTCGAAAAGAGTTTTATATTAAGCTATGGGA
CAGGGAAGATTGGGATCAAGAGGGCATGATGACCTTATTTGAATTGTTGGAAGATCAACCGTGGTTAGCTGATGAGCAAG
AACAGTTGTATTGCTATTTTAAAGTGAAATTTAGAAATCGGGTCAAAGACCGCGTACGCAGACAAGAAAGTCAGAAGCGT
AAGTTTGACCGCATGCCGCATGAGGATATTCACGATTTATCTCACGTTATACAATCGCCAGGTTTAGTCAATGATGAGCT
GTTAATGTTGAGAAGTGCCTTGAGAGATTATCGTAAGAATCTCAGCGATGACCAGCTTGAAAATTATGAAAAACTAATTA
GTGGCCAATGTTTCCGTGGTCGCCGTGAAATGATTCGCGATTTACAAATCTATTTAAAAGACTTTCGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

87.821

100

0.878
  comX/sigX Streptococcus suis isolate S10

87.179

100

0.872
  comX/sigX Streptococcus suis P1/7

87.179

100

0.872
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

48.387

99.359

0.481
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

48.387

99.359

0.481
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

45.098

98.077

0.442
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

44.444

98.077

0.436
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

43.791

98.077

0.429
  comX/comX2 Streptococcus pneumoniae Rx1

44.371

96.795

0.429
  comX/comX1 Streptococcus pneumoniae Rx1

44.371

96.795

0.429
  comX/comX2 Streptococcus pneumoniae D39

44.371

96.795

0.429
  comX/comX1 Streptococcus pneumoniae D39

44.371

96.795

0.429
  comX/comX2 Streptococcus pneumoniae R6

44.371

96.795

0.429
  comX/comX1 Streptococcus pneumoniae R6

44.371

96.795

0.429
  comX/sigX Streptococcus mutans UA159

43.506

98.718

0.429
  comX/comX2 Streptococcus pneumoniae TIGR4

43.709

96.795

0.423
  comX/comX1 Streptococcus pneumoniae TIGR4

43.709

96.795

0.423
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

43.137

98.077

0.423
  comX Streptococcus thermophilus LMG 18311

41.83

98.077

0.41
  comX Streptococcus thermophilus LMD-9

41.83

98.077

0.41
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

40.764

100

0.41
  comX/sigX Streptococcus salivarius strain HSISS4

41.176

98.077

0.404
  comX Streptococcus salivarius SK126

41.176

98.077

0.404
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

41.333

96.154

0.397
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

41.333

96.154

0.397
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40.667

96.154

0.391
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40.667

96.154

0.391
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40.667

96.154

0.391
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40.667

96.154

0.391
  comX Streptococcus sobrinus strain NIDR 6715-7

39.216

98.077

0.385