Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   K5J94_RS00160 Genome accession   NZ_CP081502
Coordinates   27790..28260 (-) Length   156 a.a.
NCBI ID   WP_167547773.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 22790..33260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS00135 - 24132..24971 (+) 840 WP_159565080.1 mechanosensitive ion channel family protein -
  K5J94_RS00140 - 24996..25562 (-) 567 WP_159565078.1 TIGR01440 family protein -
  K5J94_RS00145 - 25562..26026 (-) 465 WP_159546192.1 ECF transporter S component -
  K5J94_RS00150 - 26036..26794 (-) 759 WP_221913085.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  K5J94_RS00155 truA 26781..27533 (-) 753 WP_159546188.1 tRNA pseudouridine(38-40) synthase TruA -
  K5J94_RS00160 comX/sigX/comX2/sigX2 27790..28260 (-) 471 WP_167547773.1 sigma-70 family RNA polymerase sigma factor Regulator
  K5J94_RS00170 - 28798..30051 (+) 1254 Protein_32 ISL3 family transposase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18592.53 Da        Isoelectric Point: 7.8604

>NTDB_id=597030 K5J94_RS00160 WP_167547773.1 27790..28260(-) (comX/sigX/comX2/sigX2) [Streptococcus halichoeri strain Shali_VAS-CPH]
MVEKLFEEVKPIILKSRRKYYIQLWDQEDWLQEGRIILYQLLASHPTLYEDRGRLLVYFKTKFNNYVKDVIRGQESLKRR
FHKLPYEEISEVGHRLASGSLDVGESVCIREQLRVLREELSEEEGALLDKLVSGERFPGRCALLRKLKPYFIDFLD

Nucleotide


Download         Length: 471 bp        

>NTDB_id=597030 K5J94_RS00160 WP_167547773.1 27790..28260(-) (comX/sigX/comX2/sigX2) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGGTAGAGAAGTTATTTGAAGAGGTTAAACCTATTATTCTTAAAAGTCGGCGGAAATATTACATTCAACTTTGGGATCA
AGAAGATTGGTTACAGGAGGGTCGGATTATCTTATACCAACTCTTAGCTAGTCACCCGACATTATATGAGGATAGGGGGC
GGTTATTAGTGTACTTTAAGACGAAGTTTAATAACTACGTCAAGGATGTGATTAGAGGGCAAGAGTCCCTGAAGCGCCGT
TTTCATAAGCTGCCATATGAAGAAATCAGTGAGGTTGGGCATCGATTAGCGAGTGGTAGTCTAGACGTTGGGGAGTCGGT
ATGTATAAGGGAGCAGCTAAGAGTCCTGAGAGAGGAGCTTAGTGAAGAGGAGGGGGCATTATTAGATAAGTTAGTTAGTG
GGGAGCGTTTTCCTGGGCGTTGTGCCTTATTGCGGAAATTAAAGCCTTATTTTATTGATTTTTTAGACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

55.705

95.513

0.532
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

55.705

95.513

0.532
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

55.705

95.513

0.532
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

55.705

95.513

0.532
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

55.333

96.154

0.532
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

55.333

96.154

0.532
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

49.02

98.077

0.481
  comX/sigX Streptococcus mutans UA159

47.368

97.436

0.462
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

45.395

97.436

0.442
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

45.395

97.436

0.442
  comX Streptococcus thermophilus LMG 18311

44.371

96.795

0.429
  comX Streptococcus thermophilus LMD-9

44.371

96.795

0.429
  comX Streptococcus sobrinus strain NIDR 6715-7

44.966

95.513

0.429
  comX/sigX Streptococcus salivarius strain HSISS4

44.966

95.513

0.429
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

43.506

98.718

0.429
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

43.506

98.718

0.429
  comX/comX2 Streptococcus pneumoniae TIGR4

42.857

98.718

0.423
  comX/comX1 Streptococcus pneumoniae TIGR4

42.857

98.718

0.423
  comX/comX2 Streptococcus pneumoniae Rx1

42.857

98.718

0.423
  comX/comX1 Streptococcus pneumoniae Rx1

42.857

98.718

0.423
  comX/comX2 Streptococcus pneumoniae D39

42.857

98.718

0.423
  comX/comX1 Streptococcus pneumoniae D39

42.857

98.718

0.423
  comX/comX2 Streptococcus pneumoniae R6

42.857

98.718

0.423
  comX/comX1 Streptococcus pneumoniae R6

42.857

98.718

0.423
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

42.857

98.718

0.423
  comX Streptococcus salivarius SK126

44.295

95.513

0.423
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

42.208

98.718

0.417
  comX/sigX Streptococcus suis P1/7

42.105

97.436

0.41
  comX/sigX Streptococcus suis isolate S10

42.105

97.436

0.41
  comX/sigX Streptococcus suis D9

42.105

97.436

0.41