Detailed information NTG0059092

Bioinformatically predicted

Overview

• Name: comX/sigX
• Type: Regulator
• Locus tag: MSA_RS00730
• Genome accession: NC_021486
• Coordinates: 102851..103330 (+)
• Length: 159 a.a.
• NCBI ID: WP_001872860.1
• Uniprot ID: A0AB74H8K8
• Organism: Streptococcus agalactiae ILRI005
• Function: activate transcription of late competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	101228..102372	102851..103330	flank	479

Gene organization within MGE regions

Location: 101228..103330

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MSA_RS00725 (MSA_1530)	-	102454..102651 (+)	198	Protein_92	DUF2992 family protein	-
MSA_RS00730 (MSA_1540)	comX/sigX	102851..103330 (+)	480	WP_001872860.1	sigma-70 family RNA polymerase sigma factor	Regulator

Sequence

Protein

• Length: 159 a.a.
• Molecular weight: 19417.25 Da
• Isoelectric Point: 6.2639

>NTDB_id=59092 MSA_RS00730 WP_001872860.1 102851..103330(+) (comX/sigX) [Streptococcus agalactiae ILRI005]
MRDFEELFDKVKPIVMKLRRNYFVQLWEYDDWIQEGRIVLFRLLEEHPYLLDNEGKLFIYFKTKFSNYLNDVLRHQDCQK
RQFNKMPYEEISEVSHYVKSKGLVLDDYIAYRDTLTKVEETLSDIDKEKFEKLISGERFAGKKQFIRDIQPFFNAFKAD

Nucleotide

• Length: 480 bp

>NTDB_id=59092 MSA_RS00730 WP_001872860.1 102851..103330(+) (comX/sigX) [Streptococcus agalactiae ILRI005]
TTGAGAGATTTTGAGGAGTTGTTTGATAAAGTAAAGCCAATCGTAATGAAGCTGAGAAGAAATTATTTTGTTCAACTTTG
GGAATATGATGATTGGATTCAAGAAGGACGTATTGTACTTTTTAGGTTGCTTGAAGAACATCCGTATTTATTGGATAATG
AAGGCAAACTATTCATTTACTTTAAAACAAAATTTTCAAATTATTTAAACGATGTATTAAGACATCAAGATTGTCAAAAG
CGACAATTTAATAAAATGCCTTATGAAGAAATCAGTGAAGTTAGTCACTATGTTAAGAGTAAAGGACTAGTTTTAGATGA
CTATATTGCTTATCGTGATACTTTAACAAAAGTGGAAGAAACTTTGTCAGATATTGATAAAGAAAAATTTGAAAAACTGA
TTAGTGGTGAACGTTTCGCGGGGAAGAAACAATTCATACGAGATATTCAACCTTTTTTCAATGCTTTTAAAGCGGATTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comX/sigX	Streptococcus infantarius subsp. infantarius ATCC BAA-102	57.325	98.742	0.566
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS8232	52.349	93.711	0.491
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS8232	52.349	93.711	0.491
comX/sigX/comX1/sigX1	Streptococcus pyogenes JRS4	52.349	93.711	0.491
comX/sigX/comX2/sigX2	Streptococcus pyogenes JRS4	52.349	93.711	0.491
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS315	52	94.34	0.491
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS315	52	94.34	0.491
comX/sigX	Streptococcus mutans UA159	49.677	97.484	0.484
comX	Streptococcus sobrinus strain NIDR 6715-7	43.59	98.113	0.428
comX/sigX	Streptococcus suis D9	43.226	97.484	0.421
comX/sigX	Streptococcus suis isolate S10	43.226	97.484	0.421
comX/sigX	Streptococcus suis P1/7	43.226	97.484	0.421
comX	Streptococcus thermophilus LMD-9	42.177	92.453	0.39
comX	Streptococcus thermophilus LMG 18311	42.177	92.453	0.39
comR/comR1	Streptococcus gordonii str. Challis substr. CH1	39.869	96.226	0.384
comR/comR2	Streptococcus gordonii str. Challis substr. CH1	39.869	96.226	0.384
comX/sigX/comX2/sigX2	Streptococcus mitis SK321	39.869	96.226	0.384
comX/comX2	Streptococcus pneumoniae Rx1	40.397	94.969	0.384
comX/comX2	Streptococcus pneumoniae TIGR4	40.397	94.969	0.384
comX/comX1	Streptococcus pneumoniae TIGR4	40.397	94.969	0.384
comX/comX1	Streptococcus pneumoniae Rx1	40.397	94.969	0.384
comX/comX2	Streptococcus pneumoniae D39	40.397	94.969	0.384
comX/comX1	Streptococcus pneumoniae D39	40.397	94.969	0.384
comX/comX2	Streptococcus pneumoniae R6	40.397	94.969	0.384
comX/comX1	Streptococcus pneumoniae R6	40.397	94.969	0.384
comX/sigX/comX1/sigX1	Streptococcus mitis SK321	39.216	96.226	0.377
comX/sigX/comX2/sigX2	Streptococcus mitis NCTC 12261	39.216	96.226	0.377
comX	Streptococcus salivarius SK126	40.816	92.453	0.377
comX/sigX	Streptococcus salivarius strain HSISS4	40.816	92.453	0.377
comX/sigX/comX1/sigX1	Streptococcus mitis NCTC 12261	38.562	96.226	0.371