Detailed information    

insolico Bioinformatically predicted

Overview


Name   comX/comX2   Type   Regulator
Locus tag   KX728_RS00935 Genome accession   NZ_CP079724
Coordinates   178204..178677 (+) Length   157 a.a.
NCBI ID   WP_045591891.1    Uniprot ID   A0A3R9I308
Organism   Streptococcus oralis strain 34     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 173204..183677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS00910 (KX728_00910) - 173941..174816 (-) 876 WP_223335705.1 RluA family pseudouridine synthase -
  KX728_RS00915 (KX728_00915) pbp2a 174903..177098 (+) 2196 WP_215805157.1 penicillin-binding protein PBP2A -
  KX728_RS00920 (KX728_00920) rpmG 177151..177303 (+) 153 WP_001809375.1 50S ribosomal protein L33 -
  KX728_RS00925 (KX728_00925) secE 177313..177489 (+) 177 WP_000505776.1 preprotein translocase subunit SecE -
  KX728_RS00930 (KX728_00930) nusG 177547..178083 (+) 537 WP_000376728.1 transcription termination/antitermination protein NusG -
  KX728_RS00935 (KX728_00935) comX/comX2 178204..178677 (+) 474 WP_045591891.1 hypothetical protein Regulator

Sequence


Protein


Download         Length: 157 a.a.        Molecular weight: 19305.15 Da        Isoelectric Point: 7.8480

>NTDB_id=588956 KX728_RS00935 WP_045591891.1 178204..178677(+) (comX/comX2) [Streptococcus oralis strain 34]
MNLKDLYEESKGIVHKCRKDYHLHLWEKEDWDQEGMLCLYELVSRNPELLEGERHQLYVCFKTKFRNRILDYIRKQESHK
RRFDKEPYEEVSEISHRLGEKGLRLDDYYLFHELLKNYKSKQSMEKQELIDRLMGGEVFRGRKALLRELSLIFSEFR

Nucleotide


Download         Length: 474 bp        

>NTDB_id=588956 KX728_RS00935 WP_045591891.1 178204..178677(+) (comX/comX2) [Streptococcus oralis strain 34]
ATGAATCTAAAAGACTTATATGAAGAAAGCAAGGGAATCGTCCATAAGTGTCGCAAAGATTATCATTTGCATCTGTGGGA
GAAAGAGGACTGGGATCAGGAAGGCATGTTATGTCTGTATGAGCTGGTGAGTCGCAACCCAGAGTTACTAGAGGGGGAGC
GCCATCAACTATATGTTTGCTTTAAAACAAAATTTAGAAATCGTATTCTAGATTACATCCGTAAACAGGAAAGTCACAAG
CGCCGTTTTGACAAAGAACCTTATGAAGAGGTGAGTGAGATTAGCCATCGTCTAGGAGAAAAAGGACTCAGGCTGGACGA
TTATTATCTCTTTCACGAACTTCTAAAGAATTACAAATCAAAGCAGAGTATGGAAAAACAAGAATTAATAGACCGTCTCA
TGGGAGGGGAAGTCTTTAGAGGACGTAAAGCTCTCCTGAGAGAACTTTCCCTAATCTTTTCAGAATTTCGATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A3R9I308

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/comX2 Streptococcus pneumoniae Rx1

64.286

98.089

0.631

  comX/comX2 Streptococcus pneumoniae D39

64.286

98.089

0.631

  comX/comX1 Streptococcus pneumoniae D39

64.286

98.089

0.631

  comX/comX2 Streptococcus pneumoniae R6

64.286

98.089

0.631

  comX/comX1 Streptococcus pneumoniae R6

64.286

98.089

0.631

  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

64.286

98.089

0.631

  comX/comX1 Streptococcus pneumoniae Rx1

64.286

98.089

0.631

  comX/comX1 Streptococcus pneumoniae TIGR4

63.636

98.089

0.624

  comX/comX2 Streptococcus pneumoniae TIGR4

63.636

98.089

0.624

  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

62.987

98.089

0.618

  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

62.987

98.089

0.618

  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

62.987

98.089

0.618

  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

53.205

99.363

0.529

  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

53.205

99.363

0.529

  comX/sigX Streptococcus mutans UA159

46.711

96.815

0.452

  comX/sigX Streptococcus suis isolate S10

41.401

100

0.414

  comX/sigX Streptococcus suis D9

41.401

100

0.414

  comX/sigX Streptococcus suis P1/7

41.401

100

0.414

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

39.744

99.363

0.395

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

39.744

99.363

0.395

  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

39.744

99.363

0.395

  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

39.744

99.363

0.395

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

39.744

99.363

0.395

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

39.744

99.363

0.395

  comX Streptococcus sobrinus strain NIDR 6715-7

42.657

91.083

0.389

  comX Streptococcus thermophilus LMG 18311

40

95.541

0.382

  comX Streptococcus thermophilus LMD-9

40

95.541

0.382

  comX Streptococcus salivarius SK126

40

95.541

0.382

  comX/sigX Streptococcus salivarius strain HSISS4

40

95.541

0.382

  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

37.342

100

0.376