Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   C663_RS11995 Genome accession   NC_020244
Coordinates   2410113..2410544 (-) Length   143 a.a.
NCBI ID   WP_015384089.1    Uniprot ID   -
Organism   Bacillus subtilis XF-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2405113..2415544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS11945 (C663_2343) sinI 2405308..2405481 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  C663_RS11950 (C663_2344) sinR 2405515..2405850 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  C663_RS11955 (C663_2345) tasA 2405943..2406728 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  C663_RS11960 (C663_2346) sipW 2406792..2407364 (-) 573 WP_080030740.1 signal peptidase I -
  C663_RS11965 (C663_2347) tapA 2407348..2408109 (-) 762 WP_015384085.1 amyloid fiber anchoring/assembly protein TapA -
  C663_RS11970 (C663_2348) yqzG 2408379..2408705 (+) 327 WP_015384086.1 YqzG/YhdC family protein -
  C663_RS11975 (C663_2349) spoIIT 2408747..2408926 (-) 180 WP_003230176.1 YqzE family protein -
  C663_RS11980 (C663_2350) comGG 2408998..2409372 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  C663_RS11985 (C663_2351) comGF 2409373..2409756 (-) 384 WP_015384087.1 ComG operon protein ComGF Machinery gene
  C663_RS11990 (C663_2352) comGE 2409782..2410129 (-) 348 WP_015384088.1 ComG operon protein 5 Machinery gene
  C663_RS11995 (C663_2353) comGD 2410113..2410544 (-) 432 WP_015384089.1 comG operon protein ComGD Machinery gene
  C663_RS12000 (C663_2354) comGC 2410534..2410830 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  C663_RS12005 comGB 2410844..2411881 (-) 1038 WP_015483430.1 comG operon protein ComGB Machinery gene
  C663_RS12010 (C663_2356) comGA 2411868..2412938 (-) 1071 WP_015483431.1 competence protein ComGA Machinery gene
  C663_RS12015 (C663_2358) corA 2413348..2414301 (-) 954 WP_015483432.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16064.60 Da        Isoelectric Point: 9.6754

>NTDB_id=56009 C663_RS11995 WP_015384089.1 2410113..2410544(-) (comGD) [Bacillus subtilis XF-1]
MNIKLNEEEGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVNGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=56009 C663_RS11995 WP_015384089.1 2410113..2410544(-) (comGD) [Bacillus subtilis XF-1]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTATCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAATGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

97.902

100

0.979

Multiple sequence alignment