Detailed information    

insolico Bioinformatically predicted

Overview


Name   comX/sigX   Type   Regulator
Locus tag   KEM15_RS00455 Genome accession   NZ_CP073632
Coordinates   76840..77310 (+) Length   156 a.a.
NCBI ID   WP_130554428.1    Uniprot ID   A0A4Q8L355
Organism   Streptococcus parasuis strain NN1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 71840..82310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS00420 (KEM15_00405) recA 72845..73999 (+) 1155 WP_172036461.1 recombinase RecA Machinery gene
  KEM15_RS00425 (KEM15_00410) spx 74213..74611 (+) 399 WP_217374497.1 transcriptional regulator Spx -
  KEM15_RS00430 (KEM15_00415) - 74721..74987 (+) 267 WP_130554425.1 IreB family regulatory phosphoprotein -
  KEM15_RS00435 (KEM15_00420) ruvX 74987..75406 (+) 420 WP_130554426.1 Holliday junction resolvase RuvX -
  KEM15_RS00440 (KEM15_00425) - 75418..75738 (+) 321 WP_024392832.1 DUF1292 domain-containing protein -
  KEM15_RS00445 (KEM15_00430) - 75938..76078 (+) 141 Protein_67 ISL3 family transposase -
  KEM15_RS00450 (KEM15_00435) - 76108..76657 (+) 550 Protein_68 nucleotidyltransferase family protein -
  KEM15_RS00455 (KEM15_00440) comX/sigX 76840..77310 (+) 471 WP_130554428.1 sigma-70 family RNA polymerase sigma factor Regulator
  KEM15_RS00470 (KEM15_00455) - 78084..79361 (-) 1278 WP_274504436.1 replication-associated recombination protein A -
  KEM15_RS00475 (KEM15_00460) - 79431..79768 (+) 338 Protein_71 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  KEM15_RS00480 (KEM15_00465) - 79770..80240 (+) 471 WP_274504437.1 DUF3013 family protein -
  KEM15_RS00485 (KEM15_00470) - 80242..80595 (+) 354 WP_274504438.1 ASCH domain-containing protein -
  KEM15_RS00490 (KEM15_00475) prmA 81163..82116 (+) 954 WP_274504439.1 50S ribosomal protein L11 methyltransferase -

Sequence


Protein


Download         Length: 156 a.a.        Molecular weight: 18995.75 Da        Isoelectric Point: 7.4572

>NTDB_id=559495 KEM15_RS00455 WP_130554428.1 76840..77310(+) (comX/sigX) [Streptococcus parasuis strain NN1]
MKFEQTYAKVSGIVHKARQEFYIKLWEKSDWDQEGMMVLYELLEKQPQLYDDKEKLYVYFKVKFRNHIKDVIRKQESYKR
KFDRMAHEDIHDLSHVVKSPGLVNDEFILLQDMLQSYRQQLNSEQLEQYEKLIAGQSFSGRKQMIRDLQDYLADFK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=559495 KEM15_RS00455 WP_130554428.1 76840..77310(+) (comX/sigX) [Streptococcus parasuis strain NN1]
ATGAAATTTGAACAAACTTACGCAAAGGTTAGTGGTATTGTACATAAGGCTCGTCAAGAATTTTATATCAAGTTATGGGA
AAAGTCAGACTGGGATCAAGAAGGAATGATGGTATTATATGAATTATTAGAAAAACAACCCCAGTTATATGATGATAAAG
AAAAATTATATGTATATTTTAAAGTAAAATTTAGAAATCATATAAAGGATGTTATACGCAAGCAAGAAAGTTACAAAAGA
AAATTTGACAGAATGGCACATGAAGACATCCATGACCTATCCCATGTTGTGAAATCACCTGGACTGGTTAACGATGAATT
TATTCTTCTGCAAGATATGTTACAGTCTTATCGGCAACAGTTAAATTCAGAACAACTAGAGCAATACGAAAAATTGATAG
CAGGGCAGAGTTTTAGTGGCCGAAAACAAATGATTCGTGATTTGCAAGACTATTTAGCAGATTTTAAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4Q8L355

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

65.385

100

0.654

  comX/sigX Streptococcus suis P1/7

64.744

100

0.647

  comX/sigX Streptococcus suis isolate S10

64.744

100

0.647

  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

47.097

99.359

0.468

  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

47.097

99.359

0.468

  comX/sigX Streptococcus mutans UA159

46.753

98.718

0.462

  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

43.137

98.077

0.423

  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

42.484

98.077

0.417

  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

41.401

100

0.417

  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

41.83

98.077

0.41

  comX/comX1 Streptococcus pneumoniae Rx1

42.384

96.795

0.41

  comX/comX2 Streptococcus pneumoniae Rx1

42.384

96.795

0.41

  comX/comX2 Streptococcus pneumoniae D39

42.384

96.795

0.41

  comX/comX1 Streptococcus pneumoniae D39

42.384

96.795

0.41

  comX/comX2 Streptococcus pneumoniae R6

42.384

96.795

0.41

  comX/comX1 Streptococcus pneumoniae R6

42.384

96.795

0.41

  comX/comX1 Streptococcus pneumoniae TIGR4

41.722

96.795

0.404

  comX/comX2 Streptococcus pneumoniae TIGR4

41.722

96.795

0.404

  comX Streptococcus salivarius SK126

41.176

98.077

0.404

  comX/sigX Streptococcus salivarius strain HSISS4

41.176

98.077

0.404

  comX Streptococcus sobrinus strain NIDR 6715-7

40.523

98.077

0.397

  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

40.523

98.077

0.397

  comX Streptococcus thermophilus LMG 18311

40.523

98.077

0.397

  comX Streptococcus thermophilus LMD-9

40.523

98.077

0.397

  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40

96.154

0.385

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

40

96.154

0.385

  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40

96.154

0.385

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40

96.154

0.385

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40

96.154

0.385

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

40

96.154

0.385