Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   I6K87_RS08940 Genome accession   NZ_CP069892
Coordinates   1802687..1803160 (+) Length   157 a.a.
NCBI ID   WP_059221510.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797687..1808160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS08915 (I6K87_08915) - 1798969..1799724 (-) 756 WP_049513876.1 hypothetical protein -
  I6K87_RS08920 (I6K87_08920) - 1799872..1800933 (+) 1062 WP_204982572.1 M24 family metallopeptidase -
  I6K87_RS08925 (I6K87_08925) efp 1800992..1801552 (+) 561 WP_003026309.1 elongation factor P -
  I6K87_RS08930 (I6K87_08930) - 1801663..1802052 (+) 390 WP_006269324.1 Asp23/Gls24 family envelope stress response protein -
  I6K87_RS08935 (I6K87_08935) nusB 1802045..1802470 (+) 426 WP_003039673.1 transcription antitermination factor NusB -
  I6K87_RS08940 (I6K87_08940) comR/comR2 1802687..1803160 (+) 474 WP_059221510.1 sigma-70 family RNA polymerase sigma factor Regulator
  I6K87_RS08945 (I6K87_08945) - 1803353..1804170 (+) 818 Protein_1723 HAD family hydrolase -
  I6K87_RS09940 - 1804195..1804530 (+) 336 WP_239466780.1 LacI family DNA-binding transcriptional regulator -
  I6K87_RS09945 - 1804576..1804878 (+) 303 WP_239466781.1 hypothetical protein -
  I6K87_RS08955 (I6K87_08955) - 1804936..1805127 (+) 192 WP_204982573.1 hypothetical protein -
  I6K87_RS08960 (I6K87_08960) - 1805406..1806002 (+) 597 WP_204982574.1 TetR/AcrR family transcriptional regulator -
  I6K87_RS08965 (I6K87_08965) - 1805999..1806094 (+) 96 Protein_1728 NAD(P)H-dependent oxidoreductase -
  I6K87_RS08970 (I6K87_08970) - 1806183..1806647 (+) 465 WP_204982575.1 flavodoxin -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19267.12 Da        Isoelectric Point: 7.9720

>NTDB_id=537283 I6K87_RS08940 WP_059221510.1 1802687..1803160(+) (comR/comR2) [Streptococcus anginosus strain FDAARGOS_1357]
MEFKELYAKVRGIVLKCRREYYVHLWELSDWEQEGMLVLYQLVSRYPQLVESESQLYVYYKTKFRNHILDILRKQESQKR
KLDRQAYEEVSEIGHKLSLKELYLDELVILRDQLKSYQAQLSPEKQEQYERLLADERFKGRQAMIRELRAYLKDYSD

Nucleotide


Download         Length: 474 bp        

>NTDB_id=537283 I6K87_RS08940 WP_059221510.1 1802687..1803160(+) (comR/comR2) [Streptococcus anginosus strain FDAARGOS_1357]
ATGGAGTTCAAGGAGTTATATGCCAAGGTGAGAGGAATTGTGCTGAAGTGTCGGAGGGAATATTATGTCCACCTGTGGGA
ATTAAGCGATTGGGAACAAGAGGGCATGTTGGTGCTCTATCAGTTGGTGAGTCGCTATCCGCAGCTGGTAGAGTCAGAAA
GTCAGCTCTATGTTTACTATAAGACCAAGTTCCGCAATCATATCCTGGACATCCTCCGTAAACAGGAAAGCCAAAAACGC
AAACTGGACCGTCAAGCTTATGAAGAAGTGAGCGAGATTGGTCACAAGCTCAGCCTGAAAGAACTATATCTGGATGAATT
GGTGATTCTCCGAGACCAGCTAAAGAGTTACCAAGCTCAACTGAGTCCAGAGAAACAAGAGCAGTACGAGCGCTTACTAG
CCGATGAACGGTTCAAAGGCCGCCAAGCTATGATTCGAGAATTAAGAGCCTACTTAAAGGACTATAGTGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

54.545

98.089

0.535
  comX/comX2 Streptococcus pneumoniae TIGR4

54.545

98.089

0.535
  comX/comX1 Streptococcus pneumoniae TIGR4

54.545

98.089

0.535
  comX/comX1 Streptococcus pneumoniae R6

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae D39

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae Rx1

53.896

98.089

0.529
  comX/comX1 Streptococcus pneumoniae Rx1

53.896

98.089

0.529
  comX/comX1 Streptococcus pneumoniae D39

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae R6

53.896

98.089

0.529
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

53.896

98.089

0.529
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

53.247

98.089

0.522
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

52.597

98.089

0.516
  comX/sigX Streptococcus mutans UA159

48.718

99.363

0.484
  comX/sigX Streptococcus suis isolate S10

48.387

98.726

0.478
  comX/sigX Streptococcus suis P1/7

48.387

98.726

0.478
  comX/sigX Streptococcus suis D9

48.387

98.726

0.478
  comX Streptococcus salivarius SK126

44.805

98.089

0.439
  comX/sigX Streptococcus salivarius strain HSISS4

44.156

98.089

0.433
  comX Streptococcus thermophilus LMG 18311

44.156

98.089

0.433
  comX Streptococcus thermophilus LMD-9

44.156

98.089

0.433
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

38.462

99.363

0.382
  comX Streptococcus sobrinus strain NIDR 6715-7

38.961

98.089

0.382