Detailed information    

insolico Bioinformatically predicted

Overview


Name   comR/comR2   Type   Regulator
Locus tag   I6J38_RS09355 Genome accession   NZ_CP069558
Coordinates   1847831..1848313 (+) Length   160 a.a.
NCBI ID   WP_006267672.1    Uniprot ID   A0A380L5Q1
Organism   Streptococcus constellatus strain FDAARGOS_1208     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1842831..1853313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J38_RS09320 (I6J38_09320) - 1844120..1844758 (+) 639 WP_003071318.1 adenylate kinase -
  I6J38_RS09325 (I6J38_09325) infA 1844875..1845093 (+) 219 WP_001029883.1 translation initiation factor IF-1 -
  I6J38_RS09330 (I6J38_09330) rpmJ 1845118..1845234 (+) 117 WP_001808836.1 50S ribosomal protein L36 -
  I6J38_RS09335 (I6J38_09335) rpsM 1845250..1845615 (+) 366 WP_002262317.1 30S ribosomal protein S13 -
  I6J38_RS09340 (I6J38_09340) rpsK 1845635..1846018 (+) 384 WP_001118385.1 30S ribosomal protein S11 -
  I6J38_RS09345 (I6J38_09345) - 1846063..1847001 (+) 939 WP_020998083.1 DNA-directed RNA polymerase subunit alpha -
  I6J38_RS09350 (I6J38_09350) rplQ 1847013..1847399 (+) 387 WP_003071313.1 50S ribosomal protein L17 -
  I6J38_RS09355 (I6J38_09355) comR/comR2 1847831..1848313 (+) 483 WP_006267672.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence


Protein


Download         Length: 160 a.a.        Molecular weight: 19855.70 Da        Isoelectric Point: 7.9710

>NTDB_id=535556 I6J38_RS09355 WP_006267672.1 1847831..1848313(+) (comR/comR2) [Streptococcus constellatus strain FDAARGOS_1208]
MDFKELYDKVRGIVLKCRREYYVHLWELSDWDQEGMLVLYELVSRYPQLVESESRLYVYYKTKFRNHIKDILRKQESQKR
KLDRQVYEEVSEIGHKLSLKELYLDELVILRDQLKSYQKQLSPEKQEQYERLLADERFQGRQAMLRELRTYLQDYDERKS

Nucleotide


Download         Length: 483 bp        

>NTDB_id=535556 I6J38_RS09355 WP_006267672.1 1847831..1848313(+) (comR/comR2) [Streptococcus constellatus strain FDAARGOS_1208]
ATGGACTTCAAGGAATTGTATGACAAAGTGAGAGGGATCGTACTGAAGTGTCGCCGGGAATATTATGTCCACCTGTGGGA
GTTAAGTGATTGGGACCAAGAAGGGATGCTGGTCTTATATGAGTTGGTGAGTCGCTATCCGCAACTGGTAGAGTCAGAAA
GTCGTCTCTATGTTTACTATAAGACCAAGTTCCGTAATCACATCAAGGACATCCTGCGCAAACAAGAAAGCCAAAAGCGC
AAACTAGACCGTCAAGTCTATGAGGAAGTGAGCGAGATAGGTCACAAGCTCAGCCTGAAAGAACTCTATTTGGATGAATT
GGTGATTCTCCGAGACCAACTAAAGAGCTATCAAAAACAGCTAAGTCCAGAGAAACAAGAACAGTATGAGCGCTTACTAG
CAGATGAACGGTTTCAAGGACGCCAAGCGATGCTTCGGGAGTTACGGACCTACTTACAAGATTACGATGAAAGAAAAAGC
TAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A380L5Q1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

61.392

98.75

0.606

  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

61.392

98.75

0.606

  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

56.41

97.5

0.55

  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

55.128

97.5

0.537

  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

55.128

97.5

0.537

  comX/comX1 Streptococcus pneumoniae R6

55.556

95.625

0.531

  comX/comX1 Streptococcus pneumoniae D39

55.556

95.625

0.531

  comX/comX2 Streptococcus pneumoniae Rx1

55.556

95.625

0.531

  comX/comX1 Streptococcus pneumoniae Rx1

55.556

95.625

0.531

  comX/comX2 Streptococcus pneumoniae D39

55.556

95.625

0.531

  comX/comX2 Streptococcus pneumoniae R6

55.556

95.625

0.531

  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

54.487

97.5

0.531

  comX/comX2 Streptococcus pneumoniae TIGR4

54.902

95.625

0.525

  comX/comX1 Streptococcus pneumoniae TIGR4

54.902

95.625

0.525

  comX/sigX Streptococcus mutans UA159

50.318

98.125

0.494

  comX/sigX Streptococcus suis D9

46.452

96.875

0.45

  comX/sigX Streptococcus suis isolate S10

46.452

96.875

0.45

  comX/sigX Streptococcus suis P1/7

46.452

96.875

0.45

  comX Streptococcus salivarius SK126

43.506

96.25

0.419

  comX/sigX Streptococcus salivarius strain HSISS4

42.857

96.25

0.412

  comX Streptococcus thermophilus LMG 18311

42.857

96.25

0.412

  comX Streptococcus thermophilus LMD-9

42.857

96.25

0.412

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40.764

98.125

0.4

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40.764

98.125

0.4

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

40.764

98.125

0.4

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

40.764

98.125

0.4

  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40.764

98.125

0.4

  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40.764

98.125

0.4

  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

39.744

97.5

0.388

  comX Streptococcus sobrinus strain NIDR 6715-7

37.419

96.875

0.362