Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KZO17_RS08355 Genome accession   NZ_CP080080
Coordinates   1774321..1775748 (-) Length   475 a.a.
NCBI ID   WP_188012634.1    Uniprot ID   -
Organism   Escherichia coli strain 19SZHZ886Rt     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1769321..1780748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO17_RS08325 (KZO17_08315) yeeZ 1769377..1770201 (+) 825 WP_000754725.1 SDR family oxidoreductase -
  KZO17_RS08330 (KZO17_08320) yeeY 1770247..1771176 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KZO17_RS08335 (KZO17_08325) yoeI 1771391..1771453 (+) 63 WP_010723108.1 membrane protein YoeI -
  KZO17_RS08340 (KZO17_08330) plaP 1771443..1772801 (+) 1359 WP_024198437.1 putrescine/proton symporter PlaP -
  KZO17_RS08345 (KZO17_08335) tsuA 1772980..1774037 (+) 1058 Protein_1636 thiosulfate utilization transporter TsuA/YeeE -
  KZO17_RS08350 (KZO17_08340) tsuB 1774051..1774278 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KZO17_RS08355 (KZO17_08345) sbcB 1774321..1775748 (-) 1428 WP_188012634.1 exodeoxyribonuclease I Machinery gene
  KZO17_RS08360 (KZO17_08350) dacD 1775937..1777103 (+) 1167 WP_000830167.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KZO17_RS08365 (KZO17_08355) sbmC 1777222..1777695 (+) 474 WP_001105417.1 DNA gyrase inhibitor SbmC -
  KZO17_RS08370 (KZO17_08360) yeeA 1777893..1778951 (+) 1059 WP_001200891.1 FUSC family protein -
  KZO17_RS08375 (KZO17_08365) tmaR 1779123..1779452 (+) 330 WP_000450409.1 DUF496 family protein -
  KZO17_RS08380 (KZO17_08370) - 1779553..1779735 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KZO17_RS08385 (KZO17_08375) - 1779789..1779935 (+) 147 Protein_1644 transposase domain-containing protein -
  KZO17_RS08390 (KZO17_08380) - 1780224..1780304 (-) 81 Protein_1645 hypothetical protein -
  KZO17_RS08395 (KZO17_08385) yeeW 1780350..1780544 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54557.87 Da        Isoelectric Point: 5.6098

>NTDB_id=516861 KZO17_RS08355 WP_188012634.1 1774321..1775748(-) (sbcB) [Escherichia coli strain 19SZHZ886Rt]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPRAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=516861 KZO17_RS08355 WP_188012634.1 1774321..1775748(-) (sbcB) [Escherichia coli strain 19SZHZ886Rt]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTAGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAACGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583