Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/comX2   Type   Regulator
Locus tag   I6H77_RS03260 Genome accession   NZ_CP066021
Coordinates   676958..677431 (-) Length   157 a.a.
NCBI ID   WP_063636946.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 671958..682431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS03260 (I6H77_03260) comX/comX2 676958..677431 (-) 474 WP_063636946.1 hypothetical protein Regulator
  I6H77_RS03265 (I6H77_03265) nusG 677552..678088 (-) 537 WP_000376732.1 transcription termination/antitermination protein NusG -
  I6H77_RS03270 (I6H77_03270) secE 678147..678323 (-) 177 WP_000505776.1 preprotein translocase subunit SecE -
  I6H77_RS03275 (I6H77_03275) rpmG 678333..678485 (-) 153 WP_001809375.1 50S ribosomal protein L33 -
  I6H77_RS03280 (I6H77_03280) pbp2a 678538..680733 (-) 2196 WP_000762598.1 penicillin-binding protein PBP2A -
  I6H77_RS03285 (I6H77_03285) - 680820..681695 (+) 876 WP_002875099.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19294.18 Da        Isoelectric Point: 7.7801

>NTDB_id=516453 I6H77_RS03260 WP_063636946.1 676958..677431(-) (comX/comX2) [Streptococcus oralis strain FDAARGOS_1020]
MNLKDLYEESKGIIHKCRKDYHLHLWEKEDWDQEGMLCLYELVSCNPELLEGERHRLYVCFKTKFRNRILDYIRKQESHK
RRFDKEPYEEVSEISHRLGEKGLRLDDYYLFHELLKNYKSKQSMEKQELIDRLMGGEVFRGRKALLRELSLIFSEFR

Nucleotide


Download         Length: 474 bp        

>NTDB_id=516453 I6H77_RS03260 WP_063636946.1 676958..677431(-) (comX/comX2) [Streptococcus oralis strain FDAARGOS_1020]
ATGAATCTAAAAGATTTATATGAAGAAAGTAAGGGAATCATCCATAAGTGTCGCAAAGATTATCATTTGCATCTGTGGGA
GAAAGAGGACTGGGATCAGGAAGGCATGTTATGTCTGTATGAGCTGGTGAGTTGCAACCCAGAGTTACTAGAGGGGGAGC
GCCATCGACTTTATGTCTGCTTTAAAACAAAGTTTAGAAATCGTATCCTAGATTACATCCGTAAACAGGAAAGCCACAAG
CGCCGTTTTGACAAAGAACCCTATGAAGAGGTGAGTGAGATTAGTCATCGTCTAGGAGAAAAAGGACTCAGGCTGGACGA
TTATTATCTCTTTCACGAACTTCTAAAGAATTACAAATCAAAGCAGAGTATGGAAAAACAAGAGTTAATAGACCGTCTAA
TGGGAGGAGAAGTCTTTAGAGGACGTAAAGCTCTCCTGAGAGAACTTTCCCTAATCTTTTCAGAATTTCGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/comX2 Streptococcus pneumoniae Rx1

64.286

98.089

0.631
  comX/comX2 Streptococcus pneumoniae D39

64.286

98.089

0.631
  comX/comX1 Streptococcus pneumoniae D39

64.286

98.089

0.631
  comX/comX2 Streptococcus pneumoniae R6

64.286

98.089

0.631
  comX/comX1 Streptococcus pneumoniae R6

64.286

98.089

0.631
  comX/comX1 Streptococcus pneumoniae Rx1

64.286

98.089

0.631
  comX/comX2 Streptococcus pneumoniae TIGR4

63.636

98.089

0.624
  comX/comX1 Streptococcus pneumoniae TIGR4

63.636

98.089

0.624
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

63.636

98.089

0.624
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

62.987

98.089

0.618
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

62.338

98.089

0.611
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

62.338

98.089

0.611
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

53.205

99.363

0.529
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

53.205

99.363

0.529
  comX/sigX Streptococcus mutans UA159

46.053

96.815

0.446
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40.385

99.363

0.401
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40.385

99.363

0.401
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40.385

99.363

0.401
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

40.385

99.363

0.401
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

40.385

99.363

0.401
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40.385

99.363

0.401
  comX/sigX Streptococcus suis isolate S10

40.127

100

0.401
  comX/sigX Streptococcus suis D9

40.127

100

0.401
  comX/sigX Streptococcus suis P1/7

40.127

100

0.401
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

37.975

100

0.382
  comX Streptococcus sobrinus strain NIDR 6715-7

41.259

91.083

0.376
  comX/sigX Streptococcus salivarius strain HSISS4

39.333

95.541

0.376
  comX Streptococcus thermophilus LMG 18311

39.333

95.541

0.376
  comX Streptococcus thermophilus LMD-9

39.333

95.541

0.376
  comX Streptococcus salivarius SK126

39.333

95.541

0.376