Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/comX2   Type   Regulator
Locus tag   I6G43_RS01885 Genome accession   NZ_CP065706
Coordinates   384656..385129 (+) Length   157 a.a.
NCBI ID   WP_197905370.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 379656..390129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS01860 (I6G43_01860) - 380393..381268 (-) 876 WP_001160821.1 RluA family pseudouridine synthase -
  I6G43_RS01865 (I6G43_01865) pbp2a 381355..383550 (+) 2196 WP_000762657.1 penicillin-binding protein PBP2A -
  I6G43_RS01870 (I6G43_01870) rpmG 383603..383755 (+) 153 WP_001809375.1 50S ribosomal protein L33 -
  I6G43_RS01875 (I6G43_01875) secE 383765..383941 (+) 177 WP_000505776.1 preprotein translocase subunit SecE -
  I6G43_RS01880 (I6G43_01880) nusG 384000..384536 (+) 537 WP_000376732.1 transcription termination/antitermination protein NusG -
  I6G43_RS01885 (I6G43_01885) comX/comX2 384656..385129 (+) 474 WP_197905370.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19179.04 Da        Isoelectric Point: 8.4595

>NTDB_id=513199 I6G43_RS01885 WP_197905370.1 384656..385129(+) (comX/comX2) [Streptococcus oralis strain FDAARGOS_886]
MNLKELYEESKGIVHKCRKEYHLHLWEKEDWDQEGMLCLYELVSHHPELLVGERRRLYVCFKTKFRNRILDYIRKQESHK
RRFDKEPYEEVSEISHRLGEKGLRLDDYYLFHELLKNYKASQSKEKQEQLDRLMGGECFKGRKALLGELRVVLSDFR

Nucleotide


Download         Length: 474 bp        

>NTDB_id=513199 I6G43_RS01885 WP_197905370.1 384656..385129(+) (comX/comX2) [Streptococcus oralis strain FDAARGOS_886]
ATGAATCTGAAAGAACTATACGAAGAAAGCAAGGGGATTGTCCATAAGTGCCGCAAAGAATACCATTTACATCTGTGGGA
GAAAGAGGACTGGGACCAGGAGGGGATGCTGTGCCTGTATGAGCTGGTCAGTCACCATCCAGAGTTACTAGTTGGTGAAC
GTCGCCGATTATATGTCTGCTTTAAAACCAAATTCCGCAATCGCATCCTAGACTACATCCGTAAACAGGAAAGTCACAAG
CGCCGTTTCGACAAAGAGCCTTATGAGGAGGTGAGCGAAATCAGTCATCGCCTAGGAGAAAAAGGCCTGAGACTGGATGA
TTACTATCTCTTTCATGAGCTTCTAAAGAATTACAAGGCAAGTCAGAGTAAAGAAAAACAAGAACAACTTGACCGTCTAA
TGGGAGGAGAATGTTTCAAAGGACGCAAGGCACTTCTAGGAGAATTAAGAGTGGTATTGAGTGATTTTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/comX2 Streptococcus pneumoniae Rx1

66.234

98.089

0.65
  comX/comX2 Streptococcus pneumoniae D39

66.234

98.089

0.65
  comX/comX1 Streptococcus pneumoniae D39

66.234

98.089

0.65
  comX/comX2 Streptococcus pneumoniae R6

66.234

98.089

0.65
  comX/comX1 Streptococcus pneumoniae R6

66.234

98.089

0.65
  comX/comX1 Streptococcus pneumoniae Rx1

66.234

98.089

0.65
  comX/comX2 Streptococcus pneumoniae TIGR4

65.584

98.089

0.643
  comX/comX1 Streptococcus pneumoniae TIGR4

65.584

98.089

0.643
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

64.286

98.089

0.631
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

64.286

98.089

0.631
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

63.636

98.089

0.624
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

62.987

98.089

0.618
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

53.846

99.363

0.535
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

53.846

99.363

0.535
  comX/sigX Streptococcus mutans UA159

48.026

96.815

0.465
  comX/sigX Streptococcus suis isolate S10

43.312

100

0.433
  comX/sigX Streptococcus suis D9

43.312

100

0.433
  comX/sigX Streptococcus suis P1/7

43.312

100

0.433
  comX/sigX Streptococcus salivarius strain HSISS4

40.667

95.541

0.389
  comX Streptococcus salivarius SK126

40.667

95.541

0.389
  comX Streptococcus thermophilus LMD-9

40.667

95.541

0.389
  comX Streptococcus thermophilus LMG 18311

40.667

95.541

0.389
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

37.975

100

0.382
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

37.821

99.363

0.376
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

37.821

99.363

0.376
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

39.333

95.541

0.376
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

39.333

95.541

0.376
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

39.333

95.541

0.376
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

39.333

95.541

0.376
  comX Streptococcus sobrinus strain NIDR 6715-7

40.559

91.083

0.369