Detailed information
Bioinformatically predicted
Overview
| Name | comX/sigX | Type | Regulator |
| Locus tag | SSUD12_RS00080 | Genome accession | NC_017621 |
| Coordinates | 16033..16503 (+) | Length | 156 a.a. |
| NCBI ID | WP_014637247.1 | Uniprot ID | G7SD30 |
| Organism | Streptococcus suis D12 | ||
| Function | activate transcription of late competence genes (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 13688..57962 | 16033..16503 | within | 0 |
Gene organization within MGE regions
Location: 13688..57962
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSUD12_RS12040 | - | 13688..14017 (+) | 330 | Protein_14 | ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein | - |
| SSUD12_RS12045 | - | 14231..14566 (+) | 336 | Protein_15 | AAA family ATPase | - |
| SSUD12_RS11770 | - | 14511..15695 (+) | 1185 | WP_268741106.1 | ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein | - |
| SSUD12_RS00080 (SSUD12_0017) | comX/sigX | 16033..16503 (+) | 471 | WP_014637247.1 | sigma-70 family RNA polymerase sigma factor | Regulator |
| SSUD12_RS00185 (SSUD12_0019) | mreC | 23522..24358 (+) | 837 | WP_014637248.1 | rod shape-determining protein MreC | - |
| SSUD12_RS00190 (SSUD12_0020) | mreD | 24375..24863 (+) | 489 | WP_014637249.1 | rod shape-determining protein MreD | - |
| SSUD12_RS00195 (SSUD12_0021) | pcsB | 24948..26204 (+) | 1257 | WP_014637250.1 | peptidoglycan hydrolase PcsB | - |
| SSUD12_RS00200 (SSUD12_0022) | - | 26307..27275 (+) | 969 | WP_002935337.1 | ribose-phosphate diphosphokinase | - |
| SSUD12_RS00205 (SSUD12_0023) | - | 27362..28540 (+) | 1179 | WP_014637251.1 | pyridoxal phosphate-dependent aminotransferase | - |
| SSUD12_RS00210 (SSUD12_0024) | recO | 28527..29309 (+) | 783 | WP_014637252.1 | DNA repair protein RecO | - |
| SSUD12_RS00215 (SSUD12_0025) | plsX | 29306..30313 (+) | 1008 | WP_014637253.1 | phosphate acyltransferase PlsX | - |
| SSUD12_RS00220 (SSUD12_0026) | - | 30306..30554 (+) | 249 | WP_014637254.1 | phosphopantetheine-binding protein | - |
| SSUD12_RS00225 (SSUD12_0027) | purC | 30672..31379 (+) | 708 | WP_014637255.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| SSUD12_RS00230 (SSUD12_0028) | - | 31392..35146 (+) | 3755 | Protein_27 | phosphoribosylformylglycinamidine synthase | - |
| SSUD12_RS00235 (SSUD12_0030) | purF | 35149..36603 (+) | 1455 | WP_014637256.1 | amidophosphoribosyltransferase | - |
| SSUD12_RS00240 (SSUD12_0031) | purM | 36660..37776 (+) | 1117 | Protein_29 | phosphoribosylformylglycinamidine cyclo-ligase | - |
| SSUD12_RS00245 (SSUD12_0033) | purN | 37773..38333 (+) | 561 | WP_014637257.1 | phosphoribosylglycinamide formyltransferase | - |
| SSUD12_RS00250 (SSUD12_0034) | - | 38326..38907 (+) | 582 | WP_014637258.1 | hypothetical protein | - |
| SSUD12_RS00255 (SSUD12_0035) | purH | 38921..40468 (+) | 1548 | WP_014637259.1 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| SSUD12_RS00260 (SSUD12_0036) | - | 40534..41364 (+) | 831 | WP_041179240.1 | DNA adenine methylase | - |
| SSUD12_RS00265 (SSUD12_0037) | - | 41354..42169 (+) | 816 | WP_029750015.1 | DNA-methyltransferase | - |
| SSUD12_RS00270 (SSUD12_0038) | - | 42147..43073 (+) | 927 | WP_014637262.1 | type II restriction endonuclease | - |
| SSUD12_RS00275 (SSUD12_0039) | - | 43073..43978 (+) | 906 | WP_014637263.1 | type II restriction endonuclease | - |
| SSUD12_RS00280 (SSUD12_0040) | purD | 44098..45360 (+) | 1263 | WP_014637264.1 | phosphoribosylamine--glycine ligase | - |
| SSUD12_RS00285 (SSUD12_0041) | purE | 45386..45874 (+) | 489 | WP_014637265.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| SSUD12_RS00290 (SSUD12_0042) | purK | 45861..46946 (+) | 1086 | WP_014637266.1 | 5-(carboxyamino)imidazole ribonucleotide synthase | - |
| SSUD12_RS00295 (SSUD12_0043) | - | 46973..47908 (+) | 936 | WP_014637267.1 | hypothetical protein | - |
| SSUD12_RS00300 | - | 47921..48505 (+) | 585 | WP_041179186.1 | hypothetical protein | - |
| SSUD12_RS00305 (SSUD12_0044) | purB | 48502..49794 (+) | 1293 | WP_014637268.1 | adenylosuccinate lyase | - |
| SSUD12_RS00310 (SSUD12_0046) | - | 50582..51310 (+) | 729 | WP_014637270.1 | hypothetical protein | - |
| SSUD12_RS00315 (SSUD12_0047) | - | 51320..51898 (+) | 579 | WP_014637271.1 | CPBP family intramembrane glutamic endopeptidase | - |
| SSUD12_RS00320 (SSUD12_0048) | - | 51913..52320 (+) | 408 | WP_014637272.1 | Msa family membrane protein | - |
| SSUD12_RS00325 (SSUD12_0049) | - | 52334..53206 (+) | 873 | WP_014637273.1 | ABC transporter ATP-binding protein | - |
| SSUD12_RS00330 (SSUD12_0050) | - | 53212..53982 (+) | 771 | WP_014637274.1 | hypothetical protein | - |
| SSUD12_RS00335 (SSUD12_0051) | - | 53985..55697 (+) | 1713 | WP_014637275.1 | ABC transporter ATP-binding protein | - |
| SSUD12_RS11655 (SSUD12_0052) | - | 55798..55971 (+) | 174 | WP_014637276.1 | hypothetical protein | - |
| SSUD12_RS00340 (SSUD12_0053) | ruvB | 56215..57216 (+) | 1002 | WP_014637277.1 | Holliday junction branch migration DNA helicase RuvB | - |
| SSUD12_RS00345 (SSUD12_0054) | - | 57216..57962 (+) | 747 | Protein_51 | GNAT family N-acetyltransferase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 19024.89 Da Isoelectric Point: 8.4641
>NTDB_id=49759 SSUD12_RS00080 WP_014637247.1 16033..16503(+) (comX/sigX) [Streptococcus suis D12]
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKR
KFDRMPHEDIHELSHAIQSPGLINDELLMLRGALRDDRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKR
KFDRMPHEDIHELSHAIQSPGLINDELLMLRGALRDDRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR
Nucleotide
Download Length: 471 bp
>NTDB_id=49759 SSUD12_RS00080 WP_014637247.1 16033..16503(+) (comX/sigX) [Streptococcus suis D12]
ATGGAATTCGAAAAAGTGTACGCAAGCGTCAAAGGTATTGTAAACAAGGCTCGAAAAGAGTTTTACATTAAACTATGGGA
TCGAGATGATTGGGAACAAGAAGGAATGATGACCTTGTTTGAATTGTTGGAAGCTCAACCGTGGCTAGTTGATGAACAAG
TTCAATTATATTGTTATTTTAAAGTTAAGTTCAGAAATCGAATCAAAGATCGTATCCGCAAACAGGAAAGTCAAAAACGC
AAGTTTGACCGTATGCCACATGAAGATATTCACGAATTATCTCACGCAATACAATCACCGGGATTAATAAACGATGAACT
ATTAATGCTAAGAGGTGCCTTGAGAGATGATCGAAAAAATCTGAGCAATGATCAACTTGATAAATACGAAAAATTAATTA
GCGGACAATGTTTTAATGGTCGCCGTGAAATGATACGTGATTTACAAATTCATTTGAAAGACTTTCGCTAA
ATGGAATTCGAAAAAGTGTACGCAAGCGTCAAAGGTATTGTAAACAAGGCTCGAAAAGAGTTTTACATTAAACTATGGGA
TCGAGATGATTGGGAACAAGAAGGAATGATGACCTTGTTTGAATTGTTGGAAGCTCAACCGTGGCTAGTTGATGAACAAG
TTCAATTATATTGTTATTTTAAAGTTAAGTTCAGAAATCGAATCAAAGATCGTATCCGCAAACAGGAAAGTCAAAAACGC
AAGTTTGACCGTATGCCACATGAAGATATTCACGAATTATCTCACGCAATACAATCACCGGGATTAATAAACGATGAACT
ATTAATGCTAAGAGGTGCCTTGAGAGATGATCGAAAAAATCTGAGCAATGATCAACTTGATAAATACGAAAAATTAATTA
GCGGACAATGTTTTAATGGTCGCCGTGAAATGATACGTGATTTACAAATTCATTTGAAAGACTTTCGCTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.