Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   MSA_RS03460 Genome accession   NC_021486
Coordinates   619284..619763 (+) Length   159 a.a.
NCBI ID   WP_001872860.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 614284..624763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS03430 (MSA_7020) rlmD 615038..616405 (+) 1368 WP_016480499.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  MSA_RS03435 - 616654..616848 (+) 195 WP_041165661.1 hypothetical protein -
  MSA_RS03440 (MSA_7030) dcm 616879..617643 (+) 765 WP_016480500.1 DNA (cytosine-5-)-methyltransferase -
  MSA_RS03455 (MSA_7060) - 618887..619084 (+) 198 Protein_587 DUF2992 family protein -
  MSA_RS03460 (MSA_7070) comX/sigX 619284..619763 (+) 480 WP_001872860.1 sigma-70 family RNA polymerase sigma factor Regulator
  MSA_RS03465 (MSA_7080) - 619943..621040 (-) 1098 WP_041165742.1 site-specific integrase -
  MSA_RS03470 (MSA_7090) - 621217..621483 (-) 267 WP_016480503.1 hypothetical protein -
  MSA_RS03475 (MSA_7100) - 621551..622108 (-) 558 WP_016480504.1 hypothetical protein -
  MSA_RS03480 (MSA_7110) - 622110..622907 (-) 798 WP_016480505.1 S24 family peptidase -
  MSA_RS03485 (MSA_7120) - 623271..623450 (+) 180 WP_016480506.1 hypothetical protein -
  MSA_RS03490 (MSA_7130) - 623430..623627 (-) 198 WP_016480507.1 hypothetical protein -
  MSA_RS11705 (MSA_7140) - 623686..623844 (+) 159 WP_001104149.1 hypothetical protein -
  MSA_RS03495 (MSA_7150) - 623875..624063 (+) 189 WP_016480508.1 hypothetical protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19417.25 Da        Isoelectric Point: 6.2639

>NTDB_id=49067 MSA_RS03460 WP_001872860.1 619284..619763(+) (comX/sigX) [Streptococcus agalactiae ILRI005]
MRDFEELFDKVKPIVMKLRRNYFVQLWEYDDWIQEGRIVLFRLLEEHPYLLDNEGKLFIYFKTKFSNYLNDVLRHQDCQK
RQFNKMPYEEISEVSHYVKSKGLVLDDYIAYRDTLTKVEETLSDIDKEKFEKLISGERFAGKKQFIRDIQPFFNAFKAD

Nucleotide


Download         Length: 480 bp        

>NTDB_id=49067 MSA_RS03460 WP_001872860.1 619284..619763(+) (comX/sigX) [Streptococcus agalactiae ILRI005]
TTGAGAGATTTTGAGGAGTTGTTTGATAAAGTAAAGCCAATCGTAATGAAGCTGAGAAGAAATTATTTTGTTCAACTTTG
GGAATATGATGATTGGATTCAAGAAGGACGTATTGTACTTTTTAGGTTGCTTGAAGAACATCCGTATTTATTGGATAATG
AAGGCAAACTATTCATTTACTTTAAAACAAAATTTTCAAATTATTTAAACGATGTATTAAGACATCAAGATTGTCAAAAG
CGACAATTTAATAAAATGCCTTATGAAGAAATCAGTGAAGTTAGTCACTATGTTAAGAGTAAAGGACTAGTTTTAGATGA
CTATATTGCTTATCGTGATACTTTAACAAAAGTGGAAGAAACTTTGTCAGATATTGATAAAGAAAAATTTGAAAAACTGA
TTAGTGGTGAACGTTTCGCGGGGAAGAAACAATTCATACGAGATATTCAACCTTTTTTCAATGCTTTTAAAGCGGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

57.325

98.742

0.566
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

52.349

93.711

0.491
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

52.349

93.711

0.491
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

52.349

93.711

0.491
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

52.349

93.711

0.491
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

52

94.34

0.491
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

52

94.34

0.491
  comX/sigX Streptococcus mutans UA159

49.677

97.484

0.484
  comX Streptococcus sobrinus strain NIDR 6715-7

43.59

98.113

0.428
  comX/sigX Streptococcus suis D9

43.226

97.484

0.421
  comX/sigX Streptococcus suis isolate S10

43.226

97.484

0.421
  comX/sigX Streptococcus suis P1/7

43.226

97.484

0.421
  comX Streptococcus thermophilus LMD-9

42.177

92.453

0.39
  comX Streptococcus thermophilus LMG 18311

42.177

92.453

0.39
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

39.869

96.226

0.384
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

39.869

96.226

0.384
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

39.869

96.226

0.384
  comX/comX2 Streptococcus pneumoniae Rx1

40.397

94.969

0.384
  comX/comX2 Streptococcus pneumoniae TIGR4

40.397

94.969

0.384
  comX/comX1 Streptococcus pneumoniae TIGR4

40.397

94.969

0.384
  comX/comX1 Streptococcus pneumoniae Rx1

40.397

94.969

0.384
  comX/comX2 Streptococcus pneumoniae D39

40.397

94.969

0.384
  comX/comX1 Streptococcus pneumoniae D39

40.397

94.969

0.384
  comX/comX2 Streptococcus pneumoniae R6

40.397

94.969

0.384
  comX/comX1 Streptococcus pneumoniae R6

40.397

94.969

0.384
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

39.216

96.226

0.377
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

39.216

96.226

0.377
  comX Streptococcus salivarius SK126

40.816

92.453

0.377
  comX/sigX Streptococcus salivarius strain HSISS4

40.816

92.453

0.377
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

38.562

96.226

0.371