Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FD971_RS09845 Genome accession   NZ_CP061318
Coordinates   1895936..1896628 (+) Length   230 a.a.
NCBI ID   WP_215334117.1    Uniprot ID   -
Organism   Polynucleobacter sp. AP-Ainpum-60-G11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1890936..1901628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD971_RS09825 (FD971_09815) - 1892453..1893034 (-) 582 WP_251368630.1 DUF4390 domain-containing protein -
  FD971_RS09830 (FD971_09820) rsmB 1893031..1894344 (-) 1314 WP_215334114.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  FD971_RS09835 (FD971_09825) fmt 1894346..1895341 (-) 996 WP_215334115.1 methionyl-tRNA formyltransferase -
  FD971_RS09840 (FD971_09830) def 1895349..1895864 (-) 516 WP_215334116.1 peptide deformylase -
  FD971_RS09845 (FD971_09835) dprA 1895936..1896628 (+) 693 WP_215334117.1 DNA-processing protein DprA Machinery gene
  FD971_RS09850 (FD971_09840) - 1896825..1899503 (+) 2679 WP_215334118.1 DNA topoisomerase III -
  FD971_RS09925 mnmC 1899563..1900564 (-) 1002 Protein_1934 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 24768.80 Da        Isoelectric Point: 7.6875

>NTDB_id=481800 FD971_RS09845 WP_215334117.1 1895936..1896628(+) (dprA) [Polynucleobacter sp. AP-Ainpum-60-G11]
MYTPNRSNIVQIQRNTPEYPVRLLDLCDPPDSLYIYGDIRLLDLPMIAIVGARAASPEGMATAHYFAQALATEGYLIVSG
MAKGIDGAAHRGALGLGQSTIAVCGTGLDLVYPREHLDLAQAIGSRGLLVSEFVPGLGPKAWHFPRRNRIIAALSLGILV
IEAAERSGSLITARLGCELGREIFAIPGSIQKPLSRGCHQLLQQGAKLVQCPQDILEELTNYSKPAFKLI

Nucleotide


Download         Length: 693 bp        

>NTDB_id=481800 FD971_RS09845 WP_215334117.1 1895936..1896628(+) (dprA) [Polynucleobacter sp. AP-Ainpum-60-G11]
ATGTACACACCCAATAGATCAAACATCGTCCAAATACAGCGGAATACGCCTGAGTACCCAGTGCGCCTGCTGGATCTCTG
CGATCCGCCAGATTCGCTCTATATATATGGCGATATTCGTTTACTAGATTTGCCAATGATCGCAATTGTGGGGGCCCGGG
CAGCCAGCCCCGAAGGAATGGCAACTGCCCACTACTTCGCGCAAGCCCTGGCTACGGAAGGCTACCTCATTGTTTCCGGA
ATGGCCAAGGGGATTGATGGTGCAGCCCATCGCGGCGCCCTTGGGCTAGGTCAATCGACCATCGCGGTATGCGGCACCGG
CCTAGACCTTGTATATCCACGAGAACATCTGGATTTAGCCCAGGCCATTGGCAGTAGGGGCCTGTTGGTGTCTGAATTTG
TGCCGGGCTTGGGGCCAAAGGCCTGGCATTTCCCCCGAAGAAACCGCATCATTGCAGCCCTATCACTAGGAATCTTGGTA
ATTGAGGCTGCCGAGCGGTCTGGCTCGCTGATTACAGCTAGACTGGGTTGTGAGCTTGGTCGTGAGATTTTTGCCATCCC
AGGATCCATACAAAAGCCACTCTCGCGAGGCTGCCACCAATTACTTCAACAGGGGGCCAAGCTGGTCCAATGCCCGCAAG
ATATTCTTGAGGAGCTCACAAATTATTCAAAACCTGCATTTAAACTCATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

52.941

96.087

0.509
  dprA Vibrio cholerae strain A1552

52.174

90

0.47
  dprA Neisseria meningitidis strain C311

52.736

87.391

0.461
  dprA Neisseria gonorrhoeae MS11

52.736

87.391

0.461
  dprA Neisseria meningitidis MC58

52.736

87.391

0.461
  dprA Neisseria gonorrhoeae strain FA1090

52.239

87.391

0.457
  dprA Vibrio campbellii strain DS40M4

51.741

87.391

0.452
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.156

100

0.443
  dprA/cilB/dalA Streptococcus pneumoniae D39

50.746

87.391

0.443
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

50.746

87.391

0.443
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

50.746

87.391

0.443
  dprA/cilB/dalA Streptococcus pneumoniae R6

50.746

87.391

0.443
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

50.746

87.391

0.443
  dprA Glaesserella parasuis strain SC1401

50.249

87.391

0.439
  dprA Acinetobacter baylyi ADP1

49.029

89.565

0.439
  dprA/cilB/dalA Streptococcus mitis SK321

49.751

87.391

0.435
  dprA Acinetobacter baumannii strain A118

49.01

87.826

0.43
  dprA Acinetobacter baumannii D1279779

49.01

87.826

0.43
  dprA Haemophilus influenzae Rd KW20

47.368

90.87

0.43
  dprA Lactococcus lactis subsp. cremoris KW2

48

86.957

0.417
  dprA Streptococcus mutans UA159

46.798

88.261

0.413
  dprA Thermus thermophilus HB27

43.478

90

0.391
  dprA Bacillus subtilis subsp. subtilis str. 168

41.204

93.913

0.387
  dprA Latilactobacillus sakei subsp. sakei 23K

40.976

89.13

0.365