Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | FD975_RS10400 | Genome accession | NZ_CP061316 |
| Coordinates | 1987526..1988200 (+) | Length | 224 a.a. |
| NCBI ID | WP_215302307.1 | Uniprot ID | - |
| Organism | Polynucleobacter sp. AP-Jannik-300A-C4 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 1982526..1993200
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FD975_RS10375 (FD975_10365) | - | 1983157..1983738 (-) | 582 | WP_215302302.1 | DUF4390 domain-containing protein | - |
| FD975_RS10380 (FD975_10370) | rsmB | 1983735..1985048 (-) | 1314 | WP_215302303.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| FD975_RS10385 (FD975_10375) | htpX | 1985050..1985916 (-) | 867 | WP_215302304.1 | zinc metalloprotease HtpX | - |
| FD975_RS10390 (FD975_10380) | fmt | 1985909..1986931 (-) | 1023 | WP_215302305.1 | methionyl-tRNA formyltransferase | - |
| FD975_RS10395 (FD975_10385) | def | 1986939..1987454 (-) | 516 | WP_215302306.1 | peptide deformylase | - |
| FD975_RS10400 (FD975_10390) | dprA | 1987526..1988200 (+) | 675 | WP_215302307.1 | DNA-processing protein DprA | Machinery gene |
| FD975_RS10405 (FD975_10395) | - | 1988421..1991099 (+) | 2679 | WP_251371201.1 | DNA topoisomerase III | - |
| FD975_RS10490 | mnmC | 1991069..1992160 (-) | 1092 | Protein_2044 | FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | - |
Sequence
Protein
Download Length: 224 a.a. Molecular weight: 24197.00 Da Isoelectric Point: 9.2999
>NTDB_id=481789 FD975_RS10400 WP_215302307.1 1987526..1988200(+) (dprA) [Polynucleobacter sp. AP-Jannik-300A-C4]
MNKPKNSDIIQIHQNSAGYPARLLNLYDPPNSIYIYGDIRLLDLPMVAIVGSRKASQEGIKNAHYFAQALSAKGYLIISG
LARGIDGAAHLGALGQKQDRPTIAVCGTGLDIVYPKEHQRLAQAIGSSGLLVSELEPGLGPKAWHFPRRNRIIAALALGI
LVIEAAERSGSLITAKIGLELGREIFAIPGSIHHPLSRGCHQLLQQGAKLVQSPKDILEELENW
MNKPKNSDIIQIHQNSAGYPARLLNLYDPPNSIYIYGDIRLLDLPMVAIVGSRKASQEGIKNAHYFAQALSAKGYLIISG
LARGIDGAAHLGALGQKQDRPTIAVCGTGLDIVYPKEHQRLAQAIGSSGLLVSELEPGLGPKAWHFPRRNRIIAALALGI
LVIEAAERSGSLITAKIGLELGREIFAIPGSIHHPLSRGCHQLLQQGAKLVQSPKDILEELENW
Nucleotide
Download Length: 675 bp
>NTDB_id=481789 FD975_RS10400 WP_215302307.1 1987526..1988200(+) (dprA) [Polynucleobacter sp. AP-Jannik-300A-C4]
ATGAACAAGCCGAAAAATTCAGACATCATCCAAATTCACCAAAACTCCGCTGGCTATCCAGCTCGCCTATTAAATTTATA
CGATCCTCCCAACTCAATCTATATATATGGTGATATTCGCTTGCTGGATTTGCCGATGGTTGCCATTGTTGGATCCCGCA
AGGCCAGCCAAGAGGGAATCAAAAATGCCCACTATTTTGCGCAAGCCCTATCTGCAAAGGGCTATCTCATTATTTCGGGC
TTAGCCAGGGGTATTGATGGTGCCGCCCACTTGGGCGCCCTTGGACAGAAGCAGGACCGACCAACCATCGCAGTATGCGG
AACGGGGCTGGACATTGTGTACCCCAAAGAGCATCAAAGATTGGCCCAAGCCATTGGTAGCAGCGGCTTACTTGTGTCTG
AATTAGAGCCAGGATTGGGGCCAAAAGCCTGGCACTTCCCACGCAGGAACCGCATTATTGCCGCTCTAGCCCTAGGTATC
CTGGTAATCGAAGCAGCTGAGCGCTCTGGCTCACTGATTACAGCCAAAATAGGGCTGGAGCTTGGCCGTGAGATCTTTGC
AATTCCCGGGTCAATACATCACCCCCTATCAAGGGGCTGTCACCAGCTACTTCAGCAAGGGGCCAAACTCGTCCAATCCC
CAAAAGATATCCTGGAAGAGCTAGAAAATTGGTGA
ATGAACAAGCCGAAAAATTCAGACATCATCCAAATTCACCAAAACTCCGCTGGCTATCCAGCTCGCCTATTAAATTTATA
CGATCCTCCCAACTCAATCTATATATATGGTGATATTCGCTTGCTGGATTTGCCGATGGTTGCCATTGTTGGATCCCGCA
AGGCCAGCCAAGAGGGAATCAAAAATGCCCACTATTTTGCGCAAGCCCTATCTGCAAAGGGCTATCTCATTATTTCGGGC
TTAGCCAGGGGTATTGATGGTGCCGCCCACTTGGGCGCCCTTGGACAGAAGCAGGACCGACCAACCATCGCAGTATGCGG
AACGGGGCTGGACATTGTGTACCCCAAAGAGCATCAAAGATTGGCCCAAGCCATTGGTAGCAGCGGCTTACTTGTGTCTG
AATTAGAGCCAGGATTGGGGCCAAAAGCCTGGCACTTCCCACGCAGGAACCGCATTATTGCCGCTCTAGCCCTAGGTATC
CTGGTAATCGAAGCAGCTGAGCGCTCTGGCTCACTGATTACAGCCAAAATAGGGCTGGAGCTTGGCCGTGAGATCTTTGC
AATTCCCGGGTCAATACATCACCCCCTATCAAGGGGCTGTCACCAGCTACTTCAGCAAGGGGCCAAACTCGTCCAATCCC
CAAAAGATATCCTGGAAGAGCTAGAAAATTGGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.