Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | C2745_RS09605 | Genome accession | NZ_CP061315 |
| Coordinates | 1910579..1911253 (+) | Length | 224 a.a. |
| NCBI ID | WP_215384361.1 | Uniprot ID | - |
| Organism | Polynucleobacter sp. AP-Kolm-20A-A1 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 1905579..1916253
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2745_RS09580 (C2745_09575) | - | 1906220..1906801 (-) | 582 | WP_215384356.1 | DUF4390 domain-containing protein | - |
| C2745_RS09585 (C2745_09580) | rsmB | 1906798..1908114 (-) | 1317 | WP_215384357.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| C2745_RS09590 (C2745_09585) | htpX | 1908116..1908982 (-) | 867 | WP_215384358.1 | zinc metalloprotease HtpX | - |
| C2745_RS09595 (C2745_09590) | fmt | 1908985..1909983 (-) | 999 | WP_215384359.1 | methionyl-tRNA formyltransferase | - |
| C2745_RS09600 (C2745_09595) | def | 1909992..1910507 (-) | 516 | WP_215384360.1 | peptide deformylase | - |
| C2745_RS09605 (C2745_09600) | dprA | 1910579..1911253 (+) | 675 | WP_215384361.1 | DNA-processing protein DprA | Machinery gene |
| C2745_RS09610 (C2745_09605) | - | 1911477..1914149 (+) | 2673 | WP_215384362.1 | DNA topoisomerase III | - |
| C2745_RS09695 | mnmC | 1914119..1915210 (-) | 1092 | Protein_1880 | FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | - |
Sequence
Protein
Download Length: 224 a.a. Molecular weight: 23679.53 Da Isoelectric Point: 10.1891
>NTDB_id=481778 C2745_RS09605 WP_215384361.1 1910579..1911253(+) (dprA) [Polynucleobacter sp. AP-Kolm-20A-A1]
MQTIKPASPIVKIARGTKYYPARLNDLHDPPSNLYIKGDVHLLHQPMIAIVGSRNASAEGLQNASILAKALARAGLLILS
GMAKGVDGAAHRACIELGVNHFTGAVFGTGVDVIYPREHVGLAKAITQQGLLLSEFPPGTRPQRFHFPRRNRIIAALALG
VVVVEAAEKSGSLITARLAADLGREVFAVPGSIQNPTSGGCHLLIQQGAKLVRGSADILEELNL
MQTIKPASPIVKIARGTKYYPARLNDLHDPPSNLYIKGDVHLLHQPMIAIVGSRNASAEGLQNASILAKALARAGLLILS
GMAKGVDGAAHRACIELGVNHFTGAVFGTGVDVIYPREHVGLAKAITQQGLLLSEFPPGTRPQRFHFPRRNRIIAALALG
VVVVEAAEKSGSLITARLAADLGREVFAVPGSIQNPTSGGCHLLIQQGAKLVRGSADILEELNL
Nucleotide
Download Length: 675 bp
>NTDB_id=481778 C2745_RS09605 WP_215384361.1 1910579..1911253(+) (dprA) [Polynucleobacter sp. AP-Kolm-20A-A1]
ATGCAGACAATAAAACCAGCCAGCCCGATCGTCAAAATTGCACGCGGGACCAAATACTACCCGGCGCGTTTAAATGATTT
ACACGATCCACCCAGCAATCTATATATAAAGGGGGATGTCCACTTGCTGCACCAGCCTATGATCGCCATCGTGGGCTCTC
GTAACGCCAGCGCCGAAGGCCTTCAAAACGCTAGCATTCTTGCTAAAGCGCTAGCTCGGGCCGGCTTACTCATCCTATCT
GGGATGGCAAAAGGGGTTGATGGCGCGGCCCATAGGGCTTGTATAGAGCTGGGGGTGAATCACTTCACGGGCGCCGTATT
TGGGACGGGCGTTGATGTTATTTATCCCAGGGAACATGTTGGGCTAGCAAAAGCAATTACCCAACAGGGGCTTTTATTGT
CTGAATTTCCTCCGGGAACTAGACCCCAGCGCTTTCACTTTCCCAGGCGCAACAGAATCATTGCAGCCCTAGCCCTAGGT
GTCGTGGTGGTTGAGGCCGCTGAGAAATCGGGCTCCCTCATTACCGCCCGTCTGGCAGCAGACCTCGGAAGAGAGGTATT
TGCTGTGCCAGGATCCATCCAGAACCCCACTTCAGGCGGTTGCCATCTACTTATTCAGCAGGGCGCAAAACTGGTCCGCG
GGTCAGCAGACATCCTAGAAGAGCTCAATTTATAG
ATGCAGACAATAAAACCAGCCAGCCCGATCGTCAAAATTGCACGCGGGACCAAATACTACCCGGCGCGTTTAAATGATTT
ACACGATCCACCCAGCAATCTATATATAAAGGGGGATGTCCACTTGCTGCACCAGCCTATGATCGCCATCGTGGGCTCTC
GTAACGCCAGCGCCGAAGGCCTTCAAAACGCTAGCATTCTTGCTAAAGCGCTAGCTCGGGCCGGCTTACTCATCCTATCT
GGGATGGCAAAAGGGGTTGATGGCGCGGCCCATAGGGCTTGTATAGAGCTGGGGGTGAATCACTTCACGGGCGCCGTATT
TGGGACGGGCGTTGATGTTATTTATCCCAGGGAACATGTTGGGCTAGCAAAAGCAATTACCCAACAGGGGCTTTTATTGT
CTGAATTTCCTCCGGGAACTAGACCCCAGCGCTTTCACTTTCCCAGGCGCAACAGAATCATTGCAGCCCTAGCCCTAGGT
GTCGTGGTGGTTGAGGCCGCTGAGAAATCGGGCTCCCTCATTACCGCCCGTCTGGCAGCAGACCTCGGAAGAGAGGTATT
TGCTGTGCCAGGATCCATCCAGAACCCCACTTCAGGCGGTTGCCATCTACTTATTCAGCAGGGCGCAAAACTGGTCCGCG
GGTCAGCAGACATCCTAGAAGAGCTCAATTTATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.