Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ICV90_RS10225 Genome accession   NZ_CP061306
Coordinates   2008635..2009327 (+) Length   230 a.a.
NCBI ID   WP_215358798.1    Uniprot ID   -
Organism   Polynucleobacter sp. JS-JIR-II-b4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2003635..2014327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICV90_RS10200 (ICV90_10215) - 2004276..2004857 (-) 582 WP_251367738.1 DUF4390 domain-containing protein -
  ICV90_RS10205 (ICV90_10220) rsmB 2004854..2006170 (-) 1317 WP_215358794.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ICV90_RS10210 (ICV90_10225) htpX 2006172..2007038 (-) 867 WP_215358795.1 zinc metalloprotease HtpX -
  ICV90_RS10215 (ICV90_10230) fmt 2007041..2008039 (-) 999 WP_215358796.1 methionyl-tRNA formyltransferase -
  ICV90_RS10220 (ICV90_10235) def 2008048..2008563 (-) 516 WP_215358797.1 peptide deformylase -
  ICV90_RS10225 (ICV90_10240) dprA 2008635..2009327 (+) 693 WP_215358798.1 DNA-processing protein DprA Machinery gene
  ICV90_RS10230 (ICV90_10245) - 2009534..2012206 (+) 2673 WP_215358799.1 DNA topoisomerase III -
  ICV90_RS10320 mnmC 2012179..2013267 (-) 1089 Protein_2005 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 24440.26 Da        Isoelectric Point: 8.6820

>NTDB_id=481733 ICV90_RS10225 WP_215358798.1 2008635..2009327(+) (dprA) [Polynucleobacter sp. JS-JIR-II-b4]
MQTSSTPNAILQIDRKSPYYPIRLHDLYDPPGCLYIYGDIHLLKRPVIAIVGSRNASPEGLKNAGLFAQALSKAGALIVS
GLAKGVDSAAHQAVIELGPNHCTAAILGTGIDVVYPRQNIELSRAISQQGLLVSELPLGSGPKAWHFPRRNRIIAALAIG
VVVIEAAEKSGSLITARLAADLGREVFALPGPIHNTNSAGCHLLIQQGAKLAFKPDDVLEEFSFLSKNSI

Nucleotide


Download         Length: 693 bp        

>NTDB_id=481733 ICV90_RS10225 WP_215358798.1 2008635..2009327(+) (dprA) [Polynucleobacter sp. JS-JIR-II-b4]
ATGCAAACATCCTCCACGCCTAATGCCATTCTCCAAATCGATCGCAAGAGCCCTTATTACCCAATTCGCCTCCATGATTT
ATATGATCCCCCGGGATGTCTTTATATATATGGGGACATTCATCTTCTGAAGAGGCCCGTGATTGCGATCGTAGGCTCTA
GAAACGCCAGCCCTGAAGGCTTAAAAAATGCAGGCCTGTTTGCCCAAGCATTATCGAAAGCGGGCGCCTTGATCGTTTCT
GGCCTAGCAAAGGGGGTCGACAGCGCCGCCCATCAGGCGGTCATTGAGCTTGGACCCAATCACTGCACTGCGGCAATATT
GGGAACAGGCATAGATGTCGTCTATCCCCGTCAAAATATCGAACTATCTCGTGCCATCAGCCAACAGGGGCTATTGGTAT
CTGAGCTTCCCCTAGGCTCGGGGCCTAAAGCATGGCACTTTCCAAGAAGAAATCGCATTATTGCCGCCCTAGCTATTGGT
GTCGTTGTTATAGAGGCGGCTGAAAAGTCGGGCTCTCTCATTACAGCCCGCCTGGCCGCAGACCTTGGAAGGGAGGTTTT
CGCCCTTCCCGGGCCCATCCACAACACCAATTCTGCCGGCTGCCATCTACTTATTCAGCAAGGTGCAAAACTAGCCTTTA
AACCAGATGATGTTCTTGAAGAGTTTTCTTTTTTAAGCAAAAACAGCATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(14-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

52.273

95.652

0.5
  dprA Vibrio cholerae strain A1552

45.946

96.522

0.443
  dprA Neisseria gonorrhoeae MS11

48.571

91.304

0.443
  dprA Neisseria gonorrhoeae strain FA1090

48.571

91.304

0.443
  dprA Neisseria meningitidis strain C311

48.095

91.304

0.439
  dprA Neisseria meningitidis MC58

48.095

91.304

0.439
  dprA/cilB/dalA Streptococcus mitis SK321

49.268

89.13

0.439
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.045

96.522

0.435
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

48.78

89.13

0.435
  dprA Streptococcus mutans UA159

48.78

89.13

0.435
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

48.78

89.13

0.435
  dprA/cilB/dalA Streptococcus pneumoniae D39

48.78

89.13

0.435
  dprA/cilB/dalA Streptococcus pneumoniae R6

48.78

89.13

0.435
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

48.78

89.13

0.435
  dprA Vibrio campbellii strain DS40M4

45.972

91.739

0.422
  dprA Haemophilus influenzae Rd KW20

45.933

90.87

0.417
  dprA Acinetobacter baylyi ADP1

45.673

90.435

0.413
  dprA Lactococcus lactis subsp. cremoris KW2

45.854

89.13

0.409
  dprA Glaesserella parasuis strain SC1401

45.146

89.565

0.404
  dprA Acinetobacter baumannii D1279779

45.146

89.565

0.404
  dprA Acinetobacter baumannii strain A118

44.66

89.565

0.4
  dprA Thermus thermophilus HB27

45.5

86.957

0.396
  dprA Bacillus subtilis subsp. subtilis str. 168

42.029

90

0.378
  dprA Latilactobacillus sakei subsp. sakei 23K

40.291

89.565

0.361