Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C2759_RS10510 Genome accession   NZ_CP061302
Coordinates   1998547..1999245 (+) Length   232 a.a.
NCBI ID   WP_215355313.1    Uniprot ID   -
Organism   Polynucleobacter sp. MG-Unter2-18     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1993547..2004245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2759_RS10490 (C2759_10495) - 1995064..1995645 (-) 582 WP_251366968.1 DUF4390 domain-containing protein -
  C2759_RS10495 (C2759_10500) rsmB 1995642..1996955 (-) 1314 WP_215355307.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  C2759_RS10500 (C2759_10505) fmt 1996957..1997952 (-) 996 WP_215355309.1 methionyl-tRNA formyltransferase -
  C2759_RS10505 (C2759_10510) def 1997960..1998475 (-) 516 WP_215355311.1 peptide deformylase -
  C2759_RS10510 (C2759_10515) dprA 1998547..1999245 (+) 699 WP_215355313.1 DNA-processing protein DprA Machinery gene
  C2759_RS10515 (C2759_10520) - 1999443..2002121 (+) 2679 WP_215355315.1 DNA topoisomerase III -
  C2759_RS10600 - 2002181..2003182 (-) 1002 Protein_2063 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 24863.74 Da        Isoelectric Point: 9.0461

>NTDB_id=481711 C2759_RS10510 WP_215355313.1 1998547..1999245(+) (dprA) [Polynucleobacter sp. MG-Unter2-18]
MRISKNSNIVQIQRNSPDYPARLLDLYDPPSSLYIYGDIRLLNIPTIAIVGSRIASPEGVKNAHYFAQALSAEGYLIISG
LARGIDGAAHLGALGSNQDHPTIAVCGTGLDIVYPREHLGLAQAIGGVGLLVSELVPGSGPKAWHFPRRNRIIAALSLGI
LVIEAAERSGSLITARLGCELGREIFAIPGSIHNPLSRGCHQLLRQGAKLVQSPKDILEELPKWSKTEFKGV

Nucleotide


Download         Length: 699 bp        

>NTDB_id=481711 C2759_RS10510 WP_215355313.1 1998547..1999245(+) (dprA) [Polynucleobacter sp. MG-Unter2-18]
ATGCGCATATCTAAAAACTCTAACATTGTCCAAATTCAACGAAATTCCCCTGACTATCCAGCTCGTCTGCTAGATTTATA
CGATCCACCCAGCTCACTCTATATATATGGTGATATTCGCCTACTAAATATTCCGACGATTGCCATCGTGGGCTCAAGAA
TTGCCAGCCCAGAAGGGGTCAAGAACGCTCACTATTTTGCACAAGCCCTGTCAGCCGAGGGTTATCTCATTATTTCTGGG
CTGGCCCGAGGCATTGATGGGGCCGCCCATTTAGGTGCCCTTGGGTCAAATCAGGATCATCCAACCATAGCAGTATGTGG
AACAGGGCTTGATATCGTGTATCCAAGAGAACATCTTGGGTTGGCCCAGGCCATTGGTGGGGTAGGCCTCTTGGTGTCTG
AACTAGTCCCAGGATCAGGGCCAAAAGCATGGCATTTCCCTCGCAGAAACCGCATCATTGCAGCCCTGTCCCTTGGAATA
CTCGTGATAGAGGCGGCCGAGCGCTCTGGCTCGCTCATTACGGCTAGGTTGGGCTGTGAACTTGGCCGCGAGATTTTTGC
GATTCCGGGGTCAATACACAACCCACTCTCTAGGGGCTGCCACCAACTACTTAGGCAAGGAGCCAAACTGGTTCAATCCC
CGAAAGATATTCTTGAGGAGCTGCCAAAATGGTCAAAAACCGAATTTAAAGGTGTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

55.708

94.397

0.526
  dprA Vibrio cholerae strain A1552

52.074

93.534

0.487
  dprA Vibrio campbellii strain DS40M4

50.476

90.517

0.457
  dprA Neisseria meningitidis strain C311

51.22

88.362

0.453
  dprA Neisseria meningitidis MC58

51.22

88.362

0.453
  dprA Neisseria gonorrhoeae MS11

51.22

88.362

0.453
  dprA Neisseria gonorrhoeae strain FA1090

50.732

88.362

0.448
  dprA Glaesserella parasuis strain SC1401

49.524

90.517

0.448
  dprA Acinetobacter baylyi ADP1

50

89.655

0.448
  dprA Haemophilus influenzae Rd KW20

49.289

90.948

0.448
  dprA Acinetobacter baumannii D1279779

49.048

90.517

0.444
  dprA Acinetobacter baumannii strain A118

49.048

90.517

0.444
  dprA Streptococcus mutans UA159

50

87.931

0.44
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

49.754

87.5

0.435
  dprA/cilB/dalA Streptococcus pneumoniae R6

49.754

87.5

0.435
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

49.754

87.5

0.435
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

49.754

87.5

0.435
  dprA/cilB/dalA Streptococcus pneumoniae D39

49.754

87.5

0.435
  dprA/cilB/dalA Streptococcus mitis SK321

49.261

87.5

0.431
  dprA Lactococcus lactis subsp. cremoris KW2

49.01

87.069

0.427
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.424

99.569

0.422
  dprA Bacillus subtilis subsp. subtilis str. 168

41.818

94.828

0.397
  dprA Thermus thermophilus HB27

43.842

87.5

0.384
  dprA Latilactobacillus sakei subsp. sakei 23K

42.647

87.931

0.375