Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | FD961_RS09445 | Genome accession | NZ_CP061291 |
| Coordinates | 1875376..1876041 (+) | Length | 221 a.a. |
| NCBI ID | WP_251371365.1 | Uniprot ID | - |
| Organism | Polynucleobacter sp. TSB-Sco08W16 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 1870376..1881041
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FD961_RS09425 (FD961_09420) | - | 1871853..1872434 (-) | 582 | WP_251371271.1 | DUF4390 domain-containing protein | - |
| FD961_RS09430 (FD961_09425) | rsmB | 1872431..1873747 (-) | 1317 | WP_251371272.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| FD961_RS09435 (FD961_09430) | fmt | 1873764..1874768 (-) | 1005 | WP_215393615.1 | methionyl-tRNA formyltransferase | - |
| FD961_RS09440 (FD961_09435) | def | 1874778..1875293 (-) | 516 | WP_215393616.1 | peptide deformylase | - |
| FD961_RS09445 (FD961_09440) | dprA | 1875376..1876041 (+) | 666 | WP_251371365.1 | DNA-processing protein DprA | Machinery gene |
| FD961_RS09450 (FD961_09445) | - | 1876260..1878923 (+) | 2664 | WP_251371274.1 | DNA topoisomerase III | - |
| FD961_RS09520 | mnmC | 1878893..1879984 (-) | 1092 | Protein_1847 | FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | - |
Sequence
Protein
Download Length: 221 a.a. Molecular weight: 23443.53 Da Isoelectric Point: 10.1324
>NTDB_id=481607 FD961_RS09445 WP_251371365.1 1875376..1876041(+) (dprA) [Polynucleobacter sp. TSB-Sco08W16]
MPPNIISKIARGDKNYPLRLHDLYDAPNALYISGNTKLLRLPMVAIVGSRNASATGLKNAALFAHKLSKAGLLIISGLAR
GIDGAAHRAVLNLCQPHFTAAVCGTGLDMVYPREHLGLAKAIGQQGLLISEFAPGVGPKAFHFPKRNRIIAALALGVVVV
EATERSGSLITARIAADLGREVFALPGPIHDPLFVGCNQLIQQGAKLVQTPKDVLDELIFP
MPPNIISKIARGDKNYPLRLHDLYDAPNALYISGNTKLLRLPMVAIVGSRNASATGLKNAALFAHKLSKAGLLIISGLAR
GIDGAAHRAVLNLCQPHFTAAVCGTGLDMVYPREHLGLAKAIGQQGLLISEFAPGVGPKAFHFPKRNRIIAALALGVVVV
EATERSGSLITARIAADLGREVFALPGPIHDPLFVGCNQLIQQGAKLVQTPKDVLDELIFP
Nucleotide
Download Length: 666 bp
>NTDB_id=481607 FD961_RS09445 WP_251371365.1 1875376..1876041(+) (dprA) [Polynucleobacter sp. TSB-Sco08W16]
ATGCCACCAAACATCATCAGCAAAATCGCCAGGGGTGACAAGAACTACCCTCTCAGACTCCACGACCTCTACGATGCCCC
CAACGCCCTATATATAAGTGGAAATACAAAATTGTTACGGCTGCCAATGGTGGCAATCGTGGGCTCCCGCAATGCTAGCG
CTACAGGGCTCAAAAATGCCGCTCTATTTGCCCATAAGCTCTCGAAGGCGGGACTACTTATCATTTCAGGGCTTGCTAGG
GGCATCGATGGAGCGGCTCACCGAGCAGTCCTTAATCTTTGCCAGCCTCACTTCACGGCAGCTGTTTGCGGCACCGGCCT
AGATATGGTGTATCCAAGGGAGCATCTTGGCCTTGCAAAAGCAATTGGGCAGCAAGGGTTGCTTATCTCAGAGTTTGCGC
CTGGCGTTGGCCCCAAAGCTTTCCACTTTCCAAAACGAAATCGCATTATTGCCGCTTTAGCACTAGGTGTGGTGGTGGTT
GAGGCAACCGAGAGATCCGGCTCCCTTATTACCGCTCGTATTGCGGCAGACCTAGGAAGGGAAGTATTTGCATTGCCAGG
ACCCATCCATGACCCTCTTTTTGTAGGGTGCAATCAACTCATCCAGCAGGGCGCAAAATTAGTTCAAACCCCCAAAGACG
TGCTGGATGAGCTCATTTTTCCCTAA
ATGCCACCAAACATCATCAGCAAAATCGCCAGGGGTGACAAGAACTACCCTCTCAGACTCCACGACCTCTACGATGCCCC
CAACGCCCTATATATAAGTGGAAATACAAAATTGTTACGGCTGCCAATGGTGGCAATCGTGGGCTCCCGCAATGCTAGCG
CTACAGGGCTCAAAAATGCCGCTCTATTTGCCCATAAGCTCTCGAAGGCGGGACTACTTATCATTTCAGGGCTTGCTAGG
GGCATCGATGGAGCGGCTCACCGAGCAGTCCTTAATCTTTGCCAGCCTCACTTCACGGCAGCTGTTTGCGGCACCGGCCT
AGATATGGTGTATCCAAGGGAGCATCTTGGCCTTGCAAAAGCAATTGGGCAGCAAGGGTTGCTTATCTCAGAGTTTGCGC
CTGGCGTTGGCCCCAAAGCTTTCCACTTTCCAAAACGAAATCGCATTATTGCCGCTTTAGCACTAGGTGTGGTGGTGGTT
GAGGCAACCGAGAGATCCGGCTCCCTTATTACCGCTCGTATTGCGGCAGACCTAGGAAGGGAAGTATTTGCATTGCCAGG
ACCCATCCATGACCCTCTTTTTGTAGGGTGCAATCAACTCATCCAGCAGGGCGCAAAATTAGTTCAAACCCCCAAAGACG
TGCTGGATGAGCTCATTTTTCCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.