Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SAA6008_RS02875 Genome accession   NC_017341
Coordinates   593715..594284 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus str. JKD6008     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 588715..599284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAA6008_RS02850 (SAA6008_00535) cysE 589928..590575 (+) 648 WP_001838365.1 serine O-acetyltransferase -
  SAA6008_RS02855 (SAA6008_00536) cysS 590559..591959 (+) 1401 WP_000631964.1 cysteine--tRNA ligase -
  SAA6008_RS02860 (SAA6008_00537) - 591952..592356 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SAA6008_RS02865 (SAA6008_00538) rlmB 592364..593110 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SAA6008_RS02870 (SAA6008_00539) - 593110..593634 (+) 525 WP_000664738.1 NYN domain-containing protein -
  SAA6008_RS02875 (SAA6008_00540) sigH 593715..594284 (+) 570 WP_000872873.1 RNA polymerase sigma factor Regulator
  SAA6008_RS15320 rpmG 594399..594542 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SAA6008_RS02880 (SAA6008_00541) secE 594598..594780 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  SAA6008_RS02885 (SAA6008_00542) nusG 594793..595341 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SAA6008_RS02890 (SAA6008_00543) rplK 595522..595944 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SAA6008_RS02895 (SAA6008_00544) rplA 596152..596844 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SAA6008_RS02900 (SAA6008_00545) rplJ 597116..597616 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SAA6008_RS02905 (SAA6008_00546) rplL 597659..598027 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SAA6008_RS02910 (SAA6008_00547) - 598202..598810 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=46414 SAA6008_RS02875 WP_000872873.1 593715..594284(+) (sigH) [Staphylococcus aureus subsp. aureus str. JKD6008]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=46414 SAA6008_RS02875 WP_000872873.1 593715..594284(+) (sigH) [Staphylococcus aureus subsp. aureus str. JKD6008]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment