Detailed information    

insolico Bioinformatically predicted

Overview


Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   I6H73_RS01480 Genome accession   NZ_CP066073
Coordinates   288195..288677 (+) Length   160 a.a.
NCBI ID   WP_003057148.1    Uniprot ID   A0A9X9GB62
Organism   Streptococcus dysgalactiae strain FDAARGOS_1016     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 283195..293677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H73_RS01480 (I6H73_01480) comX/sigX/comX2/sigX2 288195..288677 (+) 483 WP_003057148.1 sigma-70 family RNA polymerase sigma factor Regulator
  I6H73_RS01485 (I6H73_01485) - 288934..289920 (+) 987 WP_115261916.1 IS30-like element IS1239 family transposase -
  I6H73_RS01490 (I6H73_01490) - 290004..290531 (+) 528 WP_014612026.1 YqeG family HAD IIIA-type phosphatase -
  I6H73_RS01495 (I6H73_01495) yqeH 290531..291649 (+) 1119 WP_002985994.1 ribosome biogenesis GTPase YqeH -
  I6H73_RS01500 (I6H73_01500) yhbY 291675..291983 (+) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  I6H73_RS01505 (I6H73_01505) - 292052..292684 (+) 633 WP_014612027.1 nicotinate-nucleotide adenylyltransferase -
  I6H73_RS01510 (I6H73_01510) yqeK 292681..293274 (+) 594 WP_003055753.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  I6H73_RS01515 (I6H73_01515) - 293250..293510 (+) 261 WP_011528257.1 isochorismatase family protein -

Sequence


Protein


Download         Length: 160 a.a.        Molecular weight: 18997.80 Da        Isoelectric Point: 8.3220

>NTDB_id=453628 I6H73_RS01480 WP_003057148.1 288195..288677(+) (comX/sigX/comX2/sigX2) [Streptococcus dysgalactiae strain FDAARGOS_1016]
MSLETGEVFEKVKPIILKLKRHYYLQLWETDDWLQEGHLVLVKLLERHPELVGDEARLYRYFKTKFSSYLKDVLRRQESQ
KRQFDKMAYEEIGDVAHAIPAGGLWLDDYVAYREVLVQVEEALSEADRKQFQALVRGERFKGRQALLRKVRPYFSGFDQG

Nucleotide


Download         Length: 483 bp        

>NTDB_id=453628 I6H73_RS01480 WP_003057148.1 288195..288677(+) (comX/sigX/comX2/sigX2) [Streptococcus dysgalactiae strain FDAARGOS_1016]
ATGTCGTTAGAGACAGGGGAGGTTTTTGAGAAGGTCAAACCTATTATTTTAAAGCTGAAGCGTCATTATTACTTACAGTT
GTGGGAGACGGATGACTGGTTACAAGAGGGGCATTTGGTTTTAGTGAAGTTGTTGGAACGTCACCCAGAGTTAGTAGGAG
ATGAGGCTCGCTTGTATCGGTATTTTAAAACCAAGTTTTCGTCGTATTTGAAAGATGTCTTGCGTCGGCAAGAAAGTCAG
AAACGCCAGTTTGACAAGATGGCTTATGAGGAGATAGGGGATGTGGCGCATGCGATTCCAGCTGGCGGGTTATGGTTGGA
TGATTATGTGGCCTATCGGGAGGTTTTAGTACAAGTGGAGGAGGCCTTAAGTGAAGCGGATCGGAAGCAGTTTCAGGCCT
TAGTGAGAGGGGAACGGTTCAAGGGGCGTCAGGCTTTGCTTAGGAAGGTTCGTCCTTACTTTAGTGGGTTTGACCAAGGG
TGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A9X9GB62

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

74.843

99.375

0.744

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

74.843

99.375

0.744

  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

74.214

99.375

0.738

  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

74.214

99.375

0.738

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

73.585

99.375

0.731

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

73.585

99.375

0.731

  comX/sigX Streptococcus mutans UA159

50

93.75

0.469

  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

48.667

93.75

0.456

  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

46.711

95

0.444

  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

45.395

95

0.431

  comX/comX1 Streptococcus pneumoniae Rx1

45.033

94.375

0.425

  comX/comX2 Streptococcus pneumoniae TIGR4

45.033

94.375

0.425

  comX/comX1 Streptococcus pneumoniae TIGR4

45.033

94.375

0.425

  comX/comX2 Streptococcus pneumoniae Rx1

45.033

94.375

0.425

  comX/comX2 Streptococcus pneumoniae D39

45.033

94.375

0.425

  comX/comX1 Streptococcus pneumoniae D39

45.033

94.375

0.425

  comX/comX2 Streptococcus pneumoniae R6

45.033

94.375

0.425

  comX/comX1 Streptococcus pneumoniae R6

45.033

94.375

0.425

  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

44.079

95

0.419

  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

44.079

95

0.419

  comX Streptococcus sobrinus strain NIDR 6715-7

44.079

95

0.419

  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

44.079

95

0.419

  comX Streptococcus thermophilus LMG 18311

43.709

94.375

0.413

  comX Streptococcus thermophilus LMD-9

43.709

94.375

0.413

  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

43.421

95

0.412

  comX/sigX Streptococcus salivarius strain HSISS4

41.722

94.375

0.394

  comX Streptococcus salivarius SK126

41.722

94.375

0.394

  comX/sigX Streptococcus suis D9

38.71

96.875

0.375

  comX/sigX Streptococcus suis isolate S10

38.71

96.875

0.375

  comX/sigX Streptococcus suis P1/7

38.71

96.875

0.375