Detailed information    

insolico Bioinformatically predicted

Overview


Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   A20_RS01455 Genome accession   NC_018936
Coordinates   270397..270855 (+) Length   152 a.a.
NCBI ID   WP_015055913.1    Uniprot ID   -
Organism   Streptococcus pyogenes A20     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 265397..275855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A20_RS01455 (A20_0307) comX/sigX/comX2/sigX2 270397..270855 (+) 459 WP_015055913.1 hypothetical protein Regulator
  A20_RS09285 - 271466..272588 (+) 1123 Protein_237 ISAs1-like element IS1548 family transposase -
  A20_RS01475 (A20_0310) - 272751..273278 (+) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  A20_RS01480 (A20_0311) yqeH 273278..274396 (+) 1119 WP_002991828.1 ribosome biogenesis GTPase YqeH -
  A20_RS01485 (A20_0312) yhbY 274421..274729 (+) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  A20_RS01490 (A20_0313) - 274798..275430 (+) 633 WP_010921896.1 nicotinate-nucleotide adenylyltransferase -

Sequence


Protein


Download         Length: 152 a.a.        Molecular weight: 18664.59 Da        Isoelectric Point: 9.7374

>NTDB_id=44980 A20_RS01455 WP_015055913.1 270397..270855(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes A20]
MKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERLYRYFKTKFSSYLKDLLRRQESQKRQFHKLAY
EEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGERFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 459 bp        

>NTDB_id=44980 A20_RS01455 WP_015055913.1 270397..270855(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes A20]
TTGAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATGACTGGTTACAAGA
AGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTATATCGCTATTTTA
AAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCATAAGTTAGCATAT
GAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTTATCAAGAGGTAAT
AGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAACGTTTCAAGGGAA
GACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

100

99.342

0.993

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

100

99.342

0.993

  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

100

99.342

0.993

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

100

99.342

0.993

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

99.338

99.342

0.987

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

99.338

99.342

0.987

  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

49.66

96.711

0.48

  comX Streptococcus sobrinus strain NIDR 6715-7

46

98.684

0.454

  comX/sigX Streptococcus mutans UA159

44.667

98.684

0.441

  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

43.537

96.711

0.421

  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

41.06

99.342

0.408

  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

41.06

99.342

0.408

  comX Streptococcus salivarius SK126

42.466

96.053

0.408

  comX/sigX Streptococcus salivarius strain HSISS4

42.466

96.053

0.408

  comX Streptococcus thermophilus LMD-9

42.177

96.711

0.408

  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

42.177

96.711

0.408

  comX Streptococcus thermophilus LMG 18311

42.177

96.711

0.408

  comX/sigX Streptococcus suis isolate S10

41.781

96.053

0.401

  comX/sigX Streptococcus suis D9

41.781

96.053

0.401

  comX/sigX Streptococcus suis P1/7

41.781

96.053

0.401

  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

41.781

96.053

0.401

  comX/comX2 Streptococcus pneumoniae D39

39.865

97.368

0.388

  comX/comX1 Streptococcus pneumoniae D39

39.865

97.368

0.388

  comX/comX2 Streptococcus pneumoniae R6

39.865

97.368

0.388

  comX/comX1 Streptococcus pneumoniae R6

39.865

97.368

0.388

  comX/comX1 Streptococcus pneumoniae Rx1

39.865

97.368

0.388

  comX/comX2 Streptococcus pneumoniae TIGR4

39.865

97.368

0.388

  comX/comX1 Streptococcus pneumoniae TIGR4

39.865

97.368

0.388

  comX/comX2 Streptococcus pneumoniae Rx1

39.865

97.368

0.388

  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

40.136

96.711

0.388


Multiple sequence alignment