Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   HHM65_RS01920 Genome accession   NZ_CP051624
Coordinates   359677..360159 (+) Length   160 a.a.
NCBI ID   WP_003057148.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A74     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 360076..361287 359677..360159 flank -83


Gene organization within MGE regions


Location: 359677..361287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHM65_RS01920 (HHM65_01925) comX/sigX/comX2/sigX2 359677..360159 (+) 483 WP_003057148.1 sigma-70 family RNA polymerase sigma factor Regulator
  HHM65_RS01925 (HHM65_01930) - 360358..361287 (-) 930 Protein_320 IS30-like element IS1239 family transposase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18997.80 Da        Isoelectric Point: 8.3220

>NTDB_id=439882 HHM65_RS01920 WP_003057148.1 359677..360159(+) (comX/sigX/comX2/sigX2) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A74]
MSLETGEVFEKVKPIILKLKRHYYLQLWETDDWLQEGHLVLVKLLERHPELVGDEARLYRYFKTKFSSYLKDVLRRQESQ
KRQFDKMAYEEIGDVAHAIPAGGLWLDDYVAYREVLVQVEEALSEADRKQFQALVRGERFKGRQALLRKVRPYFSGFDQG

Nucleotide


Download         Length: 483 bp        

>NTDB_id=439882 HHM65_RS01920 WP_003057148.1 359677..360159(+) (comX/sigX/comX2/sigX2) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A74]
ATGTCGTTAGAGACAGGGGAGGTTTTTGAGAAGGTCAAACCTATTATTTTAAAGCTGAAGCGTCATTATTACTTACAGTT
GTGGGAGACGGATGACTGGTTACAAGAGGGGCATTTGGTTTTAGTGAAGTTGTTGGAACGTCACCCAGAGTTAGTAGGAG
ATGAGGCTCGCTTGTATCGGTATTTTAAAACCAAGTTTTCGTCGTATTTGAAAGATGTCTTGCGTCGGCAAGAAAGTCAG
AAACGCCAGTTTGACAAGATGGCTTATGAGGAGATAGGGGATGTGGCGCATGCGATTCCAGCTGGCGGGTTATGGTTGGA
TGATTATGTGGCCTATCGGGAGGTTTTAGTACAAGTGGAGGAGGCCTTAAGCGAAGCGGATCGGAAGCAGTTTCAGGCCT
TAGTGAGAGGGGAACGGTTCAAGGGGCGTCAGGCTTTGCTTAGGAAGGTTCGTCCTTACTTTAGTGGGTTTGACCAAGGG
TGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

74.843

99.375

0.744
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

74.843

99.375

0.744
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

74.214

99.375

0.738
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

74.214

99.375

0.738
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

73.585

99.375

0.731
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

73.585

99.375

0.731
  comX/sigX Streptococcus mutans UA159

50

93.75

0.469
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

48.667

93.75

0.456
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

46.711

95

0.444
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

45.395

95

0.431
  comX/comX1 Streptococcus pneumoniae Rx1

45.033

94.375

0.425
  comX/comX2 Streptococcus pneumoniae TIGR4

45.033

94.375

0.425
  comX/comX1 Streptococcus pneumoniae TIGR4

45.033

94.375

0.425
  comX/comX2 Streptococcus pneumoniae Rx1

45.033

94.375

0.425
  comX/comX2 Streptococcus pneumoniae D39

45.033

94.375

0.425
  comX/comX1 Streptococcus pneumoniae D39

45.033

94.375

0.425
  comX/comX2 Streptococcus pneumoniae R6

45.033

94.375

0.425
  comX/comX1 Streptococcus pneumoniae R6

45.033

94.375

0.425
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

44.079

95

0.419
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

44.079

95

0.419
  comX Streptococcus sobrinus strain NIDR 6715-7

44.079

95

0.419
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

44.079

95

0.419
  comX Streptococcus thermophilus LMG 18311

43.709

94.375

0.413
  comX Streptococcus thermophilus LMD-9

43.709

94.375

0.413
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

43.421

95

0.412
  comX/sigX Streptococcus salivarius strain HSISS4

41.722

94.375

0.394
  comX Streptococcus salivarius SK126

41.722

94.375

0.394
  comX/sigX Streptococcus suis D9

38.71

96.875

0.375
  comX/sigX Streptococcus suis isolate S10

38.71

96.875

0.375
  comX/sigX Streptococcus suis P1/7

38.71

96.875

0.375