Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C2742_RS08325 Genome accession   NZ_CP049684
Coordinates   1640561..1641229 (+) Length   222 a.a.
NCBI ID   WP_112236933.1    Uniprot ID   -
Organism   Polynucleobacter paneuropaeus strain AP-Creno-5A-D2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1635561..1646229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2742_RS08305 (C2742_08305) - 1637097..1637678 (-) 582 WP_112208668.1 DUF4390 domain-containing protein -
  C2742_RS08310 (C2742_08310) rsmB 1637675..1639033 (-) 1359 WP_244973672.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  C2742_RS08315 (C2742_08315) fmt 1638975..1639964 (-) 990 WP_112208670.1 methionyl-tRNA formyltransferase -
  C2742_RS08320 (C2742_08320) def 1639974..1640489 (-) 516 WP_112295124.1 peptide deformylase -
  C2742_RS08325 (C2742_08325) dprA 1640561..1641229 (+) 669 WP_112236933.1 DNA-processing protein DprA Machinery gene
  C2742_RS08330 (C2742_08330) - 1641447..1644110 (+) 2664 WP_215278809.1 DNA topoisomerase III -
  C2742_RS08415 (C2742_08335) mnmC 1644083..1645171 (-) 1089 Protein_1626 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23326.28 Da        Isoelectric Point: 7.9370

>NTDB_id=426557 C2742_RS08325 WP_112236933.1 1640561..1641229(+) (dprA) [Polynucleobacter paneuropaeus strain AP-Creno-5A-D2]
MKNELPANSILPLALGATNYPKRLLDLADPPRTIYIAGKIELLSVPMIAIVGSRVASPEGIKNAGYFARTLASEGLLVIS
GLARGIDGASHRAALAVGQPTLAICGTGLDLTYPPEHHELANEIQKNGLLLGELPLGIGPKAFHFPRRNRLIAALAIGVL
VVEAAQQSGSLITARLALELGREVFAIPSSIHSPLSAGCHYLIGQGAKLVASPKEVLEELIY

Nucleotide


Download         Length: 669 bp        

>NTDB_id=426557 C2742_RS08325 WP_112236933.1 1640561..1641229(+) (dprA) [Polynucleobacter paneuropaeus strain AP-Creno-5A-D2]
ATGAAAAATGAACTGCCAGCCAACTCTATTTTGCCCCTAGCTTTAGGTGCTACAAACTATCCCAAACGCCTTCTTGACTT
GGCCGATCCTCCGCGCACTATTTATATAGCAGGAAAAATAGAGTTGCTGAGTGTGCCCATGATCGCTATTGTTGGCTCTC
GGGTAGCTAGCCCAGAAGGAATCAAAAATGCCGGTTACTTTGCTAGAACTCTTGCCAGCGAGGGCCTACTAGTCATTTCT
GGCTTGGCCAGGGGCATTGATGGGGCTTCGCACCGGGCAGCCCTTGCGGTGGGCCAACCCACATTAGCAATCTGCGGCAC
CGGCCTAGATCTCACCTACCCACCTGAACATCATGAGTTAGCGAATGAAATTCAGAAAAATGGTCTTTTATTGGGCGAGC
TGCCCTTAGGCATAGGACCCAAGGCCTTTCACTTCCCGCGTCGCAACCGCCTGATTGCAGCCCTGGCCATAGGGGTTTTA
GTGGTAGAAGCCGCCCAGCAATCGGGCTCACTTATTACGGCCCGCCTTGCATTGGAATTGGGCAGAGAAGTTTTTGCCAT
ACCCTCCTCAATTCACAGCCCCTTGTCTGCTGGATGTCACTATTTAATTGGGCAAGGGGCAAAACTGGTCGCCTCTCCAA
AAGAAGTTCTGGAAGAGCTGATTTATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(14-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

51.923

93.694

0.486
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

45.909

99.099

0.455
  dprA/cilB/dalA Streptococcus pneumoniae D39

45.909

99.099

0.455
  dprA/cilB/dalA Streptococcus pneumoniae R6

45.909

99.099

0.455
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

45.909

99.099

0.455
  dprA/cilB/dalA Streptococcus mitis SK321

45.909

99.099

0.455
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

45.909

99.099

0.455
  dprA Neisseria meningitidis strain C311

49.268

92.342

0.455
  dprA Neisseria meningitidis MC58

49.268

92.342

0.455
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.534

100

0.455
  dprA Vibrio campbellii strain DS40M4

48.077

93.694

0.45
  dprA Vibrio cholerae strain A1552

49.254

90.541

0.446
  dprA Neisseria gonorrhoeae MS11

48.756

90.541

0.441
  dprA Acinetobacter baumannii strain A118

48.039

91.892

0.441
  dprA Neisseria gonorrhoeae strain FA1090

48.756

90.541

0.441
  dprA Acinetobacter baumannii D1279779

48.039

91.892

0.441
  dprA Glaesserella parasuis strain SC1401

46.445

95.045

0.441
  dprA Streptococcus mutans UA159

44.091

99.099

0.437
  dprA Lactococcus lactis subsp. cremoris KW2

47.783

91.441

0.437
  dprA Thermus thermophilus HB27

46.154

93.694

0.432
  dprA Haemophilus influenzae Rd KW20

45.545

90.991

0.414
  dprA Acinetobacter baylyi ADP1

45.545

90.991

0.414
  dprA Bacillus subtilis subsp. subtilis str. 168

39.713

94.144

0.374
  dprA Latilactobacillus sakei subsp. sakei 23K

39.216

91.892

0.36