Detailed information NTG0410151

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: GRB21_RS04455
• Genome accession: NZ_CP047073
• Coordinates: 889591..890931 (-)
• Length: 446 a.a.
• NCBI ID: WP_011103301.1
• Uniprot ID: Q889C7
• Organism: Pseudomonas syringae pv. tomato strain delta X
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 884591..895931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRB21_RS04440	-	887303..888418 (-)	1116	WP_011103299.1	efflux RND transporter periplasmic adaptor subunit	-
GRB21_RS04445	-	888500..889117 (-)	618	WP_011103300.1	TetR/AcrR family transcriptional regulator	-
GRB21_RS04455	pilR	889591..890931 (-)	1341	WP_011103301.1	sigma-54-dependent transcriptional regulator	Regulator
GRB21_RS04460	pilS	890934..892529 (-)	1596	WP_005769277.1	sensor histidine kinase	Regulator
GRB21_RS04465	-	892519..892758 (-)	240	WP_057403016.1	PP0621 family protein	-
GRB21_RS04470	-	892892..893914 (-)	1023	WP_005769279.1	outer membrane protein assembly factor BamD	-
GRB21_RS04475	rluD	894064..895026 (+)	963	WP_003381266.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
GRB21_RS04480	pgeF	895023..895751 (+)	729	WP_011103303.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49992.02 Da
• Isoelectric Point: 6.6695

>NTDB_id=410151 GRB21_RS04455 WP_011103301.1 889591..890931(-) (pilR) [Pseudomonas syringae pv. tomato strain delta X]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPSATQPVHSIDSRLLGDSPPMRTLRNQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRIDKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNIEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAS
VLRRLAGNGAQPVARLHAHALETLKSYRFPGNVRELENMLERAYTLCENYEIHASDLRLAESASPQAQQGANLADIDNLE
DYLESIERTLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=410151 GRB21_RS04455 WP_011103301.1 889591..890931(-) (pilR) [Pseudomonas syringae pv. tomato strain delta X]
ATGAGCCAACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACGCGCAGCGCCCGCAACGTTGCCGAGGCCCATGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCCTGGAACTGGTGCAGCACATCCAGCACGGCTACCCCCATGTGCCAGTGGCG
ATGATCACCGCCCACGGCAACCTGGACACGGCGATTCATGCGTTAAAAGCCGGGGCCTTCGATTTCGTGACCAAACCGGT
GGACCTCAACCGGCTCCGCGAACTGGTCAATAGTGCTCTGAGCCTGCCCTCCGCCACTCAACCGGTGCACAGCATCGACA
GCCGTCTGCTGGGTGATTCGCCGCCGATGCGCACCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCACCCATC
TACATCAGCGGCGAATCGGGCAGTGGCAAAGAGCTGGTAGCCCGACTGATTCACGAGCAAGGGCCGCGCATCGACAAACC
GTTCGTGCCGGTCAACTGCGGGGCTATCCCTTCCGAATTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
GCGGTGCCCACGAAGACAAGCCAGGGTTGTTTCAGGCGGCGCACAACGGCACGCTGTTTCTTGATGAGGTCGCTGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGCGCGATCCAGGAAAAGTCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAGGT
CGTTGACGTGCGCATTCTATGCGCCACCCACAAGGACCTGAATATCGAAGTCGCTGCAGGTCGTTTCCGTCAGGACCTGT
ATTACCGACTGAACGTGATCGAACTGCGCGTACCTTCACTGCGCGAGCGGCGTGAGGATATCGATCAGTTGGCAGCCAGT
GTTTTGCGACGACTTGCCGGCAACGGCGCTCAGCCCGTCGCGCGCCTGCATGCGCATGCACTGGAAACGCTAAAAAGTTA
TCGATTCCCCGGGAACGTGCGCGAACTGGAAAACATGCTGGAACGCGCTTACACCCTCTGTGAAAACTATGAGATCCACG
CCAGCGACCTGCGTCTGGCAGAGTCCGCCAGCCCCCAGGCACAACAGGGTGCGAACCTGGCTGATATCGATAACCTGGAA
GACTACCTGGAAAGCATCGAACGCACACTCATCCTCCAGGCGCTGGAAGAAACCCGCTGGAACCGCACCGCAGCGGCCGA
GCGGCTCAGTTTGTCATTCAGATCGTTGCGTTACCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-116)

3D structure

• AlphaFold DB: Q889C7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.878	99.327	0.774
pilR	Acinetobacter baumannii strain A118	48.491	100	0.504