Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | GAY96_RS00860 | Genome accession | NZ_CP045550 |
| Coordinates | 179915..180949 (+) | Length | 344 a.a. |
| NCBI ID | WP_228345624.1 | Uniprot ID | A0A9E8FIX3 |
| Organism | Venatoribacter cucullus strain ASxS5 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 174915..185949
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GAY96_RS00840 (GAY96_00835) | - | 177154..177417 (-) | 264 | WP_228345620.1 | DUF167 family protein | - |
| GAY96_RS00845 (GAY96_00840) | - | 177444..178037 (-) | 594 | WP_265573973.1 | YggT family protein | - |
| GAY96_RS00850 (GAY96_00845) | proC | 178133..178951 (-) | 819 | WP_228345622.1 | pyrroline-5-carboxylate reductase | - |
| GAY96_RS00855 (GAY96_00850) | - | 178994..179698 (-) | 705 | WP_265573974.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| GAY96_RS00860 (GAY96_00855) | pilT | 179915..180949 (+) | 1035 | WP_228345624.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| GAY96_RS00865 (GAY96_00860) | pilU | 180962..182077 (+) | 1116 | WP_228345625.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| GAY96_RS00870 (GAY96_00865) | - | 182171..184447 (+) | 2277 | WP_265573975.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| GAY96_RS00875 (GAY96_00870) | ideA | 184517..185200 (+) | 684 | WP_265573976.1 | endonuclease | Regulator |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38084.70 Da Isoelectric Point: 6.6678
>NTDB_id=394962 GAY96_RS00860 WP_228345624.1 179915..180949(+) (pilT) [Venatoribacter cucullus strain ASxS5]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPALGHKEVHSLVYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNHNRGAGAVFRTIPSKVLTMDQLGMGQVFKDLARIPRGIVLVTGPTGSGKSTTLAAMIDYINENKYDHILTVED
PIEFVHESKKSLVNQREVHRDTLGFNEALRSALREDPDVILVGELRDLETIRLALTAAETGHIVFGTLHTSSAAKTIDRI
VDVFPAEEKSMVRSMLSESLQGVISQTLLKKNGGGRVAAHEIMVGTPAIRNLIREDKIAQMYSAIQTGSAYGMQTMDQCL
QNLMNKGLITREVAREKAKIPDNF
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPALGHKEVHSLVYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNHNRGAGAVFRTIPSKVLTMDQLGMGQVFKDLARIPRGIVLVTGPTGSGKSTTLAAMIDYINENKYDHILTVED
PIEFVHESKKSLVNQREVHRDTLGFNEALRSALREDPDVILVGELRDLETIRLALTAAETGHIVFGTLHTSSAAKTIDRI
VDVFPAEEKSMVRSMLSESLQGVISQTLLKKNGGGRVAAHEIMVGTPAIRNLIREDKIAQMYSAIQTGSAYGMQTMDQCL
QNLMNKGLITREVAREKAKIPDNF
Nucleotide
Download Length: 1035 bp
>NTDB_id=394962 GAY96_RS00860 WP_228345624.1 179915..180949(+) (pilT) [Venatoribacter cucullus strain ASxS5]
ATGGATATTACCGAACTGCTGGCGTTCAGTGCCAAACAAGGCGCATCCGACCTGCATCTGTCCGCGGGCTTACCGCCGAT
GATCCGGGTCGACGGCGATGTACGCCGTATCAACCTGCCGGCACTGGGGCATAAAGAAGTTCATAGCCTGGTGTATGACA
TCATGAACGACAAGCAGCGTAAGGATTTTGAAGAATTCCTGGAAACTGACTTCTCGTTTGAAGTGCCGGGGGTGGCGCGT
TTCCGGGTCAACGCCTTTAACCACAACCGCGGTGCCGGGGCGGTATTCCGGACCATTCCGTCCAAAGTGCTGACCATGGA
CCAGCTCGGCATGGGCCAGGTGTTTAAAGATCTGGCCCGTATTCCGCGCGGTATTGTGCTGGTGACCGGGCCGACCGGTT
CGGGTAAATCCACCACCCTCGCGGCGATGATCGACTATATCAACGAAAATAAGTACGACCATATTCTGACCGTGGAAGAC
CCGATCGAATTCGTACACGAATCGAAAAAATCCCTGGTCAACCAGCGGGAAGTTCACCGTGACACCTTAGGTTTTAACGA
AGCACTGCGTTCGGCGCTGCGGGAAGACCCGGATGTCATTCTGGTGGGTGAGCTGCGGGATCTGGAAACCATTCGTCTGG
CACTGACCGCCGCGGAAACCGGTCACATTGTGTTCGGTACACTGCACACCAGTTCGGCGGCGAAAACCATTGACCGTATC
GTCGACGTTTTCCCGGCGGAAGAAAAATCCATGGTGCGTTCCATGCTGTCGGAATCGTTGCAGGGGGTTATTTCCCAGAC
CCTGCTGAAGAAAAACGGCGGTGGCCGGGTGGCGGCCCACGAAATTATGGTGGGAACGCCGGCCATCCGTAACCTGATCC
GCGAAGACAAAATTGCGCAGATGTATTCGGCTATTCAGACCGGTTCTGCGTACGGTATGCAGACCATGGATCAATGTCTG
CAGAATCTGATGAATAAGGGGCTGATCACCCGCGAAGTGGCACGTGAAAAGGCCAAAATTCCGGATAACTTCTGA
ATGGATATTACCGAACTGCTGGCGTTCAGTGCCAAACAAGGCGCATCCGACCTGCATCTGTCCGCGGGCTTACCGCCGAT
GATCCGGGTCGACGGCGATGTACGCCGTATCAACCTGCCGGCACTGGGGCATAAAGAAGTTCATAGCCTGGTGTATGACA
TCATGAACGACAAGCAGCGTAAGGATTTTGAAGAATTCCTGGAAACTGACTTCTCGTTTGAAGTGCCGGGGGTGGCGCGT
TTCCGGGTCAACGCCTTTAACCACAACCGCGGTGCCGGGGCGGTATTCCGGACCATTCCGTCCAAAGTGCTGACCATGGA
CCAGCTCGGCATGGGCCAGGTGTTTAAAGATCTGGCCCGTATTCCGCGCGGTATTGTGCTGGTGACCGGGCCGACCGGTT
CGGGTAAATCCACCACCCTCGCGGCGATGATCGACTATATCAACGAAAATAAGTACGACCATATTCTGACCGTGGAAGAC
CCGATCGAATTCGTACACGAATCGAAAAAATCCCTGGTCAACCAGCGGGAAGTTCACCGTGACACCTTAGGTTTTAACGA
AGCACTGCGTTCGGCGCTGCGGGAAGACCCGGATGTCATTCTGGTGGGTGAGCTGCGGGATCTGGAAACCATTCGTCTGG
CACTGACCGCCGCGGAAACCGGTCACATTGTGTTCGGTACACTGCACACCAGTTCGGCGGCGAAAACCATTGACCGTATC
GTCGACGTTTTCCCGGCGGAAGAAAAATCCATGGTGCGTTCCATGCTGTCGGAATCGTTGCAGGGGGTTATTTCCCAGAC
CCTGCTGAAGAAAAACGGCGGTGGCCGGGTGGCGGCCCACGAAATTATGGTGGGAACGCCGGCCATCCGTAACCTGATCC
GCGAAGACAAAATTGCGCAGATGTATTCGGCTATTCAGACCGGTTCTGCGTACGGTATGCAGACCATGGATCAATGTCTG
CAGAATCTGATGAATAAGGGGCTGATCACCCGCGAAGTGGCACGTGAAAAGGCCAAAATTCCGGATAACTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
86.628 |
100 |
0.866 |
| pilT | Pseudomonas stutzeri DSM 10701 |
85.465 |
100 |
0.855 |
| pilT | Acinetobacter nosocomialis M2 |
82.558 |
100 |
0.826 |
| pilT | Acinetobacter baumannii D1279779 |
82.558 |
100 |
0.826 |
| pilT | Acinetobacter baumannii strain A118 |
82.558 |
100 |
0.826 |
| pilT | Acinetobacter baylyi ADP1 |
79.07 |
100 |
0.791 |
| pilT | Legionella pneumophila strain Lp02 |
75.148 |
98.256 |
0.738 |
| pilT | Legionella pneumophila strain ERS1305867 |
75.148 |
98.256 |
0.738 |
| pilT | Neisseria meningitidis 8013 |
69.412 |
98.837 |
0.686 |
| pilT | Neisseria gonorrhoeae MS11 |
68.824 |
98.837 |
0.68 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
66.765 |
98.837 |
0.66 |
| pilT | Vibrio cholerae strain A1552 |
66.765 |
98.837 |
0.66 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
53.043 |
100 |
0.532 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.896 |
97.384 |
0.398 |
| pilU | Vibrio cholerae strain A1552 |
41.846 |
94.477 |
0.395 |
| pilU | Acinetobacter baylyi ADP1 |
39.017 |
100 |
0.392 |