Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   GAY96_RS00875 Genome accession   NZ_CP045550
Coordinates   184517..185200 (+) Length   227 a.a.
NCBI ID   WP_265573976.1    Uniprot ID   -
Organism   Venatoribacter cucullus strain ASxS5     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 179517..190200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAY96_RS00860 (GAY96_00855) pilT 179915..180949 (+) 1035 WP_228345624.1 type IV pilus twitching motility protein PilT Machinery gene
  GAY96_RS00865 (GAY96_00860) pilU 180962..182077 (+) 1116 WP_228345625.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  GAY96_RS00870 (GAY96_00865) - 182171..184447 (+) 2277 WP_265573975.1 bifunctional diguanylate cyclase/phosphodiesterase -
  GAY96_RS00875 (GAY96_00870) ideA 184517..185200 (+) 684 WP_265573976.1 endonuclease Regulator
  GAY96_RS00880 (GAY96_00875) - 185404..186471 (+) 1068 WP_265573977.1 HlyD family secretion protein -
  GAY96_RS00885 (GAY96_00880) rbbA 186468..189200 (+) 2733 WP_265573978.1 ribosome-associated ATPase/putative transporter RbbA -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26213.85 Da        Isoelectric Point: 8.9392

>NTDB_id=394964 GAY96_RS00875 WP_265573976.1 184517..185200(+) (ideA) [Venatoribacter cucullus strain ASxS5]
MIVRWLCGCLALFSLLVQAQTGPANFNEAKRLAVKIYAGHPYTFYCDCAFSGKQIDARSCGYAPRKNAKRGARLEWEHVV
PAWEFGHQRQCWQHGGRKNCVKNDALFRRMEADLHNLVPAVGELNGDRSNYRFGMLEGEPRVYGQCDFEVDFKLRRAEPK
DDRRGDVARIYFYMRDQYGLQISRQQNQLFTAWSKLDPPDAWECERNRRIALLQGRGNPHVQACPAP

Nucleotide


Download         Length: 684 bp        

>NTDB_id=394964 GAY96_RS00875 WP_265573976.1 184517..185200(+) (ideA) [Venatoribacter cucullus strain ASxS5]
ATGATTGTGCGCTGGTTGTGTGGTTGTCTCGCACTGTTTTCCCTGTTGGTTCAGGCCCAGACCGGGCCGGCTAATTTCAA
CGAAGCCAAACGGCTGGCAGTTAAGATTTATGCCGGCCATCCCTATACCTTTTATTGTGATTGCGCCTTCAGCGGCAAGC
AGATTGATGCCCGCAGTTGTGGCTACGCACCGCGCAAAAACGCTAAGCGCGGCGCACGGCTGGAGTGGGAGCATGTGGTA
CCGGCCTGGGAGTTTGGCCATCAGCGCCAGTGCTGGCAGCACGGCGGGCGCAAAAACTGCGTAAAAAATGATGCGCTGTT
CCGGCGCATGGAAGCCGACCTGCACAACCTGGTGCCGGCGGTGGGCGAGCTGAACGGTGACCGTTCCAACTATCGCTTTG
GCATGCTCGAGGGTGAGCCGCGCGTGTACGGTCAGTGTGATTTTGAAGTGGACTTCAAATTGCGTCGCGCCGAGCCTAAA
GATGATCGTCGCGGCGATGTGGCGCGCATTTATTTTTATATGCGCGATCAATACGGTCTGCAGATCAGCCGCCAGCAGAA
TCAGCTCTTTACCGCCTGGAGCAAACTCGACCCGCCGGATGCCTGGGAATGCGAGCGTAACCGTCGCATTGCCTTGCTGC
AGGGGCGCGGCAACCCGCATGTGCAGGCTTGCCCGGCCCCCTGA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(28-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

63.256

94.714

0.599
  dns Vibrio parahaemolyticus RIMD 2210633

57.143

98.678

0.564
  dns Aliivibrio fischeri ES114

52.609

100

0.533
  dns Vibrio cholerae strain A1552

51.515

100

0.524
  dns Campylobacter jejuni RM1221

40.444

99.119

0.401

Multiple sequence alignment