Detailed information
Bioinformatically predicted
Overview
| Name | pilL-C | Type | Machinery gene |
| Locus tag | HPY15_RS07245 | Genome accession | NZ_CP053800 |
| Coordinates | 1594235..1594615 (+) | Length | 126 a.a. |
| NCBI ID | WP_000045526.1 | Uniprot ID | Q6BBL2 |
| Organism | Vibrio cholerae strain SO5Y | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1589235..1599615
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPY15_RS07220 (HPY15_07225) | - | 1589827..1590483 (+) | 657 | WP_046126712.1 | HEAT repeat domain-containing protein | - |
| HPY15_RS07225 (HPY15_07230) | - | 1590494..1591339 (+) | 846 | WP_001002906.1 | protein-glutamate O-methyltransferase CheR | - |
| HPY15_RS07230 (HPY15_07235) | - | 1591339..1591710 (+) | 372 | WP_000757478.1 | PleD family two-component system response regulator | - |
| HPY15_RS07235 (HPY15_07240) | - | 1591719..1593992 (+) | 2274 | WP_001178902.1 | chemotaxis protein CheA | - |
| HPY15_RS07240 (HPY15_07245) | - | 1593982..1594242 (+) | 261 | WP_001143862.1 | hypothetical protein | - |
| HPY15_RS07245 (HPY15_07250) | pilL-C | 1594235..1594615 (+) | 381 | WP_000045526.1 | response regulator | Machinery gene |
| HPY15_RS07250 (HPY15_07255) | - | 1594623..1595858 (+) | 1236 | WP_046126711.1 | methyl-accepting chemotaxis protein | - |
| HPY15_RS07255 (HPY15_07260) | - | 1595913..1596227 (-) | 315 | WP_046126710.1 | multidrug efflux SMR transporter | - |
| HPY15_RS07260 (HPY15_07265) | - | 1596310..1597827 (-) | 1518 | WP_046126709.1 | cryptochrome/deoxyribodipyrimidine photo-lyase family protein | - |
| HPY15_RS07265 (HPY15_07270) | - | 1597983..1599389 (-) | 1407 | WP_046126708.1 | MDR family MFS transporter | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13674.04 Da Isoelectric Point: 9.8959
>NTDB_id=394964 HPY15_RS07245 WP_000045526.1 1594235..1594615(+) (pilL-C) [Vibrio cholerae strain SO5Y]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
Nucleotide
Download Length: 381 bp
>NTDB_id=394964 HPY15_RS07245 WP_000045526.1 1594235..1594615(+) (pilL-C) [Vibrio cholerae strain SO5Y]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilL-C | Synechocystis sp. PCC 6803 |
39.2 |
99.206 |
0.389 |